Variant report

Variant	rs2082140
Chromosome Location	chr2:56051568-56051569
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2867970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45535043	0.98[EUR][1000 genomes]
rs6735143	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72807723	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72807726	0.91[AMR][1000 genomes]
rs72807741	0.91[AMR][1000 genomes]
rs73940319	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7571341	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9753376	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9753385	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56048800-56051800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:56050400-56054400	Weak transcription	A549	lung
3	chr2:56051400-56051600	Active TSS	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links