Variant report

Variant	rs2082764
Chromosome Location	chr15:79206350-79206351
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:79204974..79207838-chr15:79210921..79213668,2	K562	blood:
2	chr15:79206090..79206967-chr15:79271525..79272450,5	MCF-7	breast:
3	chr15:79205981..79206933-chr15:79297869..79298631,2	MCF-7	breast:
4	chr15:79196785..79198846-chr15:79204561..79206760,2	K562	blood:
5	chr15:79204348..79206445-chr15:79222058..79224035,2	MCF-7	breast:
6	chr15:79206034..79206939-chr15:79295471..79296333,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000058335	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11853058	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11854790	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11856993	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11857815	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11857844	0.95[YRI][hapmap];0.90[AFR][1000 genomes]
rs11857964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2289693	0.96[AFR][1000 genomes]
rs2869820	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4283202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60132959	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61433603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6495350	0.89[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7166142	1.00[AFR][1000 genomes]
rs7172767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7180086	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74024489	1.00[AMR][1000 genomes]
rs74024491	1.00[AMR][1000 genomes]
rs74024492	1.00[AMR][1000 genomes]
rs8023320	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8025166	0.88[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8027614	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8028433	0.84[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8039160	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs894785	0.94[YRI][hapmap];0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79171200-79215600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr15:79171800-79207800	Strong transcription	Fetal Thymus	thymus
3	chr15:79172200-79207000	Strong transcription	Primary B cells from peripheral blood	blood
4	chr15:79172400-79216200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:79172600-79207400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr15:79172800-79206800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr15:79173600-79206400	Strong transcription	Rectal Mucosa Donor 31	rectum
8	chr15:79173800-79206400	Strong transcription	Fetal Muscle Trunk	muscle
9	chr15:79176800-79215200	Strong transcription	Dnd41	blood
10	chr15:79177000-79207800	Strong transcription	Primary T cells fromperipheralblood	blood
11	chr15:79177200-79206800	Strong transcription	Rectal Mucosa Donor 29	rectum
12	chr15:79178200-79219400	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr15:79185600-79208600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr15:79187400-79213600	Weak transcription	Small Intestine	intestine
15	chr15:79188000-79209400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr15:79190000-79208200	Strong transcription	Primary T cells from cord blood	blood
17	chr15:79190000-79222200	Strong transcription	Thymus	Thymus
18	chr15:79190400-79207000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr15:79190400-79208200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr15:79194800-79207000	Strong transcription	K562	blood
21	chr15:79197200-79213600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr15:79199000-79206400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr15:79199000-79213800	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr15:79199200-79207600	Strong transcription	Placenta	Placenta
25	chr15:79199400-79206400	Weak transcription	Psoas Muscle	Psoas
26	chr15:79199600-79206600	Strong transcription	Osteobl	bone
27	chr15:79199600-79207800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr15:79199600-79218800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr15:79199800-79208000	Strong transcription	A549	lung
30	chr15:79199800-79229400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr15:79200000-79206400	Strong transcription	Skeletal Muscle Female	skeletal muscle
32	chr15:79200200-79206400	Weak transcription	Left Ventricle	heart
33	chr15:79200400-79208200	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr15:79200800-79206400	Strong transcription	Lung	lung
35	chr15:79200800-79207200	Strong transcription	Primary B cells from cord blood	blood
36	chr15:79200800-79208200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr15:79200800-79208200	Strong transcription	Sigmoid Colon	Sigmoid Colon
38	chr15:79200800-79208400	Strong transcription	Primary hematopoietic stem cells	blood
39	chr15:79200800-79208400	Strong transcription	Fetal Intestine Large	intestine
40	chr15:79201000-79208400	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr15:79201600-79207000	Strong transcription	Primary T helper cells PMA-I stimulated	--
42	chr15:79202200-79206400	Strong transcription	Duodenum Mucosa	Duodenum
43	chr15:79202200-79206600	Strong transcription	GM12878-XiMat	blood
44	chr15:79202200-79207000	Strong transcription	NH-A	brain
45	chr15:79202200-79207800	Strong transcription	NHLF	lung
46	chr15:79202200-79209200	Weak transcription	Fetal Heart	heart
47	chr15:79202400-79206400	Strong transcription	Stomach Smooth Muscle	stomach
48	chr15:79202400-79206800	Strong transcription	HUES48 Cell Line	embryonic stem cell
49	chr15:79202400-79213400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr15:79202600-79206600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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