Variant report

Variant	rs2084219
Chromosome Location	chr11:18713303-18713304
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:15)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:15 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr11:18713157-18713492	K562	blood:	n/a	n/a
2	STAT1	chr11:18713240-18713783	Hela-S3	cervix:	n/a	n/a
3	MAX	chr11:18713175-18713313	K562	blood:	n/a	n/a
4	CUX1	chr11:18713219-18713769	K562	blood:	n/a	n/a
5	JUN	chr11:18713199-18713584	K562	blood:	n/a	n/a
6	ARID3A	chr11:18713254-18713595	K562	blood:	n/a	n/a
7	JUND	chr11:18713156-18713757	K562	blood:	n/a	n/a
8	STAT1	chr11:18713165-18713758	K562	blood:	n/a	n/a
9	TAL1	chr11:18713160-18713436	K562	blood:	n/a	n/a
10	STAT5A	chr11:18713244-18713759	K562	blood:	n/a	n/a
11	TBL1XR1	chr11:18713267-18713621	K562	blood:	n/a	n/a
12	STAT5A	chr11:18713286-18713845	K562	blood:	n/a	n/a
13	ATF1	chr11:18713270-18713671	K562	blood:	n/a	n/a
14	EP300	chr11:18713143-18713679	K562	blood:	n/a	n/a
15	TEAD4	chr11:18713143-18713553	K562	blood:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:18712732..18716294-chr11:18718075..18720979,3	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs60928664	0.83[ASN][1000 genomes]
rs73424485	0.83[ASN][1000 genomes]
rs73424497	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553633	chr11:18311701-19058451	Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv1046886	chr11:18547568-18781448	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv540956	chr11:18547568-18781448	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
4	nsv983163	chr11:18702181-18736146	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3384506	chr11:18703609-18713322	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18687000-18719800	Weak transcription	Ovary	ovary
2	chr11:18703400-18719800	Weak transcription	Right Atrium	heart
3	chr11:18712600-18713600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:18712600-18713800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:18712600-18714400	Enhancers	K562	blood
6	chr11:18713200-18713400	Enhancers	H9 Cell Line	embryonic stem cell
7	chr11:18713200-18713400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr11:18713200-18713400	Enhancers	HSMMtube	muscle
9	chr11:18713200-18713400	Enhancers	Osteobl	bone
10	chr11:18713200-18713600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:18713200-18713600	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr11:18713200-18713600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:18713200-18719800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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