Variant report

Variant	rs2085627
Chromosome Location	chr8:110228004-110228005
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10100690	0.81[ASN][1000 genomes]
rs10464819	0.82[ASN][1000 genomes]
rs10464848	0.82[ASN][1000 genomes]
rs10464849	0.82[ASN][1000 genomes]
rs10955512	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10955514	0.82[ASN][1000 genomes]
rs11775991	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12546169	0.81[ASN][1000 genomes]
rs12546985	0.82[ASN][1000 genomes]
rs12674513	0.82[ASN][1000 genomes]
rs12674533	0.82[ASN][1000 genomes]
rs1380098	0.82[ASN][1000 genomes]
rs1380099	0.81[ASN][1000 genomes]
rs1458921	0.82[ASN][1000 genomes]
rs1458924	0.82[ASN][1000 genomes]
rs1458925	0.82[ASN][1000 genomes]
rs1458926	0.81[ASN][1000 genomes]
rs1458927	0.81[ASN][1000 genomes]
rs1548082	0.82[ASN][1000 genomes]
rs1548083	0.82[ASN][1000 genomes]
rs17364037	0.82[ASN][1000 genomes]
rs1947630	0.82[ASN][1000 genomes]
rs1947631	0.82[ASN][1000 genomes]
rs2007179	0.81[ASN][1000 genomes]
rs2054255	0.82[ASN][1000 genomes]
rs2067780	0.82[ASN][1000 genomes]
rs2085628	0.85[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2085629	0.91[ASN][1000 genomes]
rs2125512	0.80[ASN][1000 genomes]
rs2168965	0.80[ASN][1000 genomes]
rs2882176	0.82[ASN][1000 genomes]
rs28870477	0.82[ASN][1000 genomes]
rs2926191	0.81[ASN][1000 genomes]
rs2926192	0.81[ASN][1000 genomes]
rs2926198	0.82[ASN][1000 genomes]
rs2926199	0.81[ASN][1000 genomes]
rs2926202	0.82[ASN][1000 genomes]
rs2926203	0.82[ASN][1000 genomes]
rs2926204	0.82[ASN][1000 genomes]
rs2926209	0.82[ASN][1000 genomes]
rs2926213	0.82[ASN][1000 genomes]
rs2926216	0.82[ASN][1000 genomes]
rs2926217	0.82[ASN][1000 genomes]
rs2926218	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2926220	0.82[ASN][1000 genomes]
rs2926223	0.82[ASN][1000 genomes]
rs2926283	0.81[ASN][1000 genomes]
rs2980587	0.82[ASN][1000 genomes]
rs2980588	0.82[ASN][1000 genomes]
rs2980590	0.82[ASN][1000 genomes]
rs2980592	0.82[ASN][1000 genomes]
rs2980595	0.82[ASN][1000 genomes]
rs2980596	0.82[ASN][1000 genomes]
rs2980598	0.82[ASN][1000 genomes]
rs2980599	0.82[ASN][1000 genomes]
rs2980601	0.82[ASN][1000 genomes]
rs2980603	0.82[ASN][1000 genomes]
rs2980604	0.82[ASN][1000 genomes]
rs2980605	0.81[ASN][1000 genomes]
rs2980608	0.81[ASN][1000 genomes]
rs2980609	0.82[ASN][1000 genomes]
rs2980635	0.82[ASN][1000 genomes]
rs34979579	0.84[EUR][1000 genomes]
rs4273834	0.82[ASN][1000 genomes]
rs4604407	0.83[ASN][1000 genomes]
rs4734210	0.82[ASN][1000 genomes]
rs4735116	0.81[ASN][1000 genomes]
rs4735118	0.80[ASN][1000 genomes]
rs4735121	0.83[ASN][1000 genomes]
rs4735122	0.82[ASN][1000 genomes]
rs55765942	0.82[ASN][1000 genomes]
rs6469245	0.81[ASN][1000 genomes]
rs6988041	0.81[ASN][1000 genomes]
rs7008174	0.83[ASN][1000 genomes]
rs922044	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023204	chr8:110169573-110303085	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1031663	chr8:110177432-110303085	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv891272	chr8:110217266-110268104	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv891273	chr8:110219735-110475874	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv891274	chr8:110224047-110308776	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv891275	chr8:110224047-110319234	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110191400-110237400	Weak transcription	Left Ventricle	heart
2	chr8:110204800-110230600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:110211200-110311600	Weak transcription	Right Ventricle	heart
4	chr8:110225600-110231000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:110225800-110241800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr8:110226000-110230600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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