Variant report

Variant	rs2086809
Chromosome Location	chr16:80357658-80357659
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:80116624..80119575-chr16:80356454..80358256,2	MCF-7	breast:
2	chr16:80352039..80354003-chr16:80355342..80358091,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11150251	1.00[AMR][1000 genomes]
rs12934434	1.00[AMR][1000 genomes]
rs13339027	1.00[AMR][1000 genomes]
rs16953014	1.00[AMR][1000 genomes]
rs16953037	1.00[AMR][1000 genomes]
rs16953078	1.00[AMR][1000 genomes]
rs28630847	1.00[AMR][1000 genomes]
rs28829271	1.00[AMR][1000 genomes]
rs56005098	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56130301	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57630839	1.00[AMR][1000 genomes]
rs57740447	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58089953	1.00[AMR][1000 genomes]
rs60777660	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60957378	1.00[AMR][1000 genomes]
rs6564746	1.00[AMR][1000 genomes]
rs6564747	1.00[AMR][1000 genomes]
rs7204613	1.00[AMR][1000 genomes]
rs73577643	1.00[AMR][1000 genomes]
rs73579646	1.00[AMR][1000 genomes]
rs73579647	1.00[AMR][1000 genomes]
rs73579651	1.00[AMR][1000 genomes]
rs73579655	1.00[AMR][1000 genomes]
rs73581439	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73581483	1.00[AMR][1000 genomes]
rs73581486	1.00[AMR][1000 genomes]
rs74028280	1.00[AMR][1000 genomes]
rs74028409	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74028410	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74028463	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74029608	1.00[AMR][1000 genomes]
rs74029609	1.00[AMR][1000 genomes]
rs74030061	1.00[AMR][1000 genomes]
rs8047720	1.00[AMR][1000 genomes]
rs8049405	1.00[AMR][1000 genomes]
rs8061220	1.00[AMR][1000 genomes]
rs9889095	1.00[AMR][1000 genomes]
rs9921104	1.00[AMR][1000 genomes]
rs9922244	1.00[AMR][1000 genomes]
rs9922479	1.00[AMR][1000 genomes]
rs9925651	1.00[AMR][1000 genomes]
rs9926298	1.00[AMR][1000 genomes]
rs9927513	1.00[AMR][1000 genomes]
rs9928544	1.00[AMR][1000 genomes]
rs9938944	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055228	chr16:80207546-80378842	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1061068	chr16:80207546-80537052	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1063466	chr16:80227628-80360463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv949197	chr16:80284557-80456403	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1064628	chr16:80286004-80406177	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv542986	chr16:80286004-80406177	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	esv2762333	chr16:80307755-80509983	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv1056026	chr16:80317627-80471469	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv542987	chr16:80317627-80471469	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv906998	chr16:80320056-80371102	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv906999	chr16:80335933-80387019	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv833299	chr16:80341745-80549683	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80356800-80358400	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr16:80356800-80358800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr16:80356800-80360000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr16:80357000-80358400	Enhancers	Brain Germinal Matrix	brain
5	chr16:80357200-80357800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr16:80357200-80358000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr16:80357200-80358600	Enhancers	H1 Cell Line	embryonic stem cell
8	chr16:80357200-80358800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr16:80357200-80359000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr16:80357400-80357800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr16:80357400-80357800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr16:80357400-80358400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr16:80357400-80358600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr16:80357600-80358400	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr16:80357600-80358800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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