Variant report

Variant	rs2087215
Chromosome Location	chr11:47144542-47144543
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 114 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs10466478	0.83[CHB][hapmap]
rs10501319	0.93[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1060573	0.83[CHB][hapmap];0.94[GIH][hapmap]
rs10742797	0.93[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs10769225	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10769226	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.84[ASN][1000 genomes]
rs10769227	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10769228	0.85[ASN][1000 genomes]
rs10769234	0.86[CHB][hapmap]
rs10769248	0.87[ASN][1000 genomes]
rs10838635	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs10838640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10838641	0.85[ASN][1000 genomes]
rs10838644	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.87[ASN][1000 genomes]
rs10838646	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10838652	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10838658	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10838660	0.83[CHB][hapmap];0.80[CHD][hapmap];0.94[GIH][hapmap]
rs10838662	0.93[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.96[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10838663	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.98[ASN][1000 genomes]
rs10838664	0.93[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11039033	0.81[ASN][1000 genomes]
rs11039035	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap]
rs11039074	0.90[CHB][hapmap];0.83[JPT][hapmap]
rs11039080	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11039081	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11039097	0.83[CHB][hapmap];0.80[CHD][hapmap];0.94[GIH][hapmap]
rs11039098	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11039105	0.83[CHB][hapmap];0.94[GIH][hapmap]
rs11039112	0.83[CHB][hapmap];0.94[GIH][hapmap]
rs11039119	0.83[CHB][hapmap];0.89[GIH][hapmap]
rs11600292	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs11600668	0.83[CHB][hapmap];0.89[GIH][hapmap]
rs11601798	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11602250	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11603373	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11608083	0.81[ASN][1000 genomes]
rs12224096	0.82[CHB][hapmap]
rs12417519	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.96[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12574410	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12796744	0.83[CHB][hapmap];0.80[CHD][hapmap];0.92[GIH][hapmap]
rs1352307	1.00[LWK][hapmap];1.00[MKK][hapmap]
rs17790204	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1872896	0.83[CHB][hapmap];0.80[CHD][hapmap];0.94[GIH][hapmap]
rs2029298	0.86[GIH][hapmap]
rs2279438	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2279439	0.93[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2957873	0.81[MEX][hapmap]
rs3758666	0.85[ASN][1000 genomes]
rs3758667	0.93[CEU][hapmap];0.81[ASN][1000 genomes]
rs3922684	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4269876	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4315028	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4394802	1.00[CEU][hapmap];0.95[CHB][hapmap];0.82[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.82[ASN][1000 genomes]
rs4494268	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.86[ASN][1000 genomes]
rs4498951	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4528282	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4548577	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4567413	0.84[GIH][hapmap]
rs4576779	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4581406	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs4587689	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4647709	1.00[LWK][hapmap];1.00[MKK][hapmap]
rs4752815	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.82[ASN][1000 genomes]
rs4752816	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.82[ASN][1000 genomes]
rs4752951	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4752957	0.83[CHB][hapmap];0.80[CHD][hapmap];0.92[GIH][hapmap]
rs4752962	0.83[CHB][hapmap]
rs4752965	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4752967	0.83[CHB][hapmap]
rs4752968	0.89[ASN][1000 genomes]
rs4752969	0.87[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61896133	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61896136	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61897787	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61897844	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61897857	0.85[ASN][1000 genomes]
rs6485715	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.82[ASN][1000 genomes]
rs6485716	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs6485726	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6485739	0.83[CHB][hapmap];0.80[CHD][hapmap];0.94[GIH][hapmap]
rs7103581	0.83[CHB][hapmap];0.92[GIH][hapmap]
rs7108822	1.00[CEU][hapmap];0.90[ASN][1000 genomes]
rs7108902	0.83[CHB][hapmap];0.92[GIH][hapmap]
rs7111270	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7112854	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7114683	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7121418	0.83[CHB][hapmap];0.80[CHD][hapmap];0.94[GIH][hapmap]
rs7123632	0.84[ASN][1000 genomes]
rs7124648	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.90[ASN][1000 genomes]
rs7125807	0.82[CHB][hapmap];0.92[GIH][hapmap]
rs7126005	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.90[ASN][1000 genomes]
rs7127741	0.91[CEU][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7128193	0.80[ASN][1000 genomes]
rs7128650	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.90[ASN][1000 genomes]
rs7130006	0.93[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.92[GIH][hapmap];0.90[JPT][hapmap];0.81[TSI][hapmap];0.91[ASN][1000 genomes]
rs7130947	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.82[ASN][1000 genomes]
rs747650	0.83[CHB][hapmap];0.94[GIH][hapmap]
rs749067	1.00[LWK][hapmap]
rs7929688	0.82[ASN][1000 genomes]
rs7931260	0.83[CHB][hapmap];0.92[GIH][hapmap]
rs7935346	0.88[CEU][hapmap];0.83[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.85[ASN][1000 genomes]
rs7937101	0.84[GIH][hapmap]
rs7937410	0.93[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.90[TSI][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7938169	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.82[ASN][1000 genomes]
rs7939786	0.82[ASN][1000 genomes]
rs7940240	0.93[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7945315	0.83[CHB][hapmap];0.80[CHD][hapmap];0.92[GIH][hapmap]
rs7945558	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs7946709	0.83[CHB][hapmap];0.92[GIH][hapmap]
rs7950753	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7951979	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs901747	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs923324	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs2087215	C11orf49	cis	parietal	SCAN
rs2087215	F2	cis	cerebellum	SCAN
rs2087215	ACP2	cis	lymphoblastoid	seeQTL
rs2087215	NUP160	cis	cerebellum	SCAN

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47124600-47159000	Weak transcription	Primary T cells from cord blood	blood
2	chr11:47129400-47158000	Weak transcription	Aorta	Aorta
3	chr11:47129400-47158600	Weak transcription	Spleen	Spleen
4	chr11:47130000-47159000	Weak transcription	Hela-S3	cervix
5	chr11:47131600-47150400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:47131600-47155000	Weak transcription	Right Atrium	heart
7	chr11:47131600-47159400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:47131800-47150600	Weak transcription	Fetal Stomach	stomach
9	chr11:47131800-47161200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:47132400-47144800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:47132600-47155600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr11:47140400-47159000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr11:47141000-47148000	Weak transcription	NHEK	skin
14	chr11:47141000-47159000	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr11:47141000-47159400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr11:47141000-47164600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:47141200-47144600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr11:47141200-47145000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr11:47141200-47145000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr11:47141200-47150600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr11:47141200-47151000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr11:47141200-47154200	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr11:47141200-47158400	Weak transcription	Stomach Smooth Muscle	stomach
24	chr11:47141200-47159400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr11:47143600-47147800	Weak transcription	Pancreas	Pancrea
26	chr11:47143600-47164600	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr11:47143600-47175200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr11:47144200-47159400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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