Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10864166	0.82[CEU][hapmap]
rs11120519	0.81[CEU][hapmap]
rs11120581	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs12038616	0.93[CEU][hapmap];0.91[JPT][hapmap]
rs12038695	0.92[CEU][hapmap];0.95[JPT][hapmap]
rs12407482	0.81[EUR][1000 genomes]
rs12740245	0.82[CEU][hapmap]
rs12753507	0.81[CEU][hapmap]
rs1319603	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1507298	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1538547	0.86[CEU][hapmap]
rs17024500	0.81[CEU][hapmap]
rs1819739	0.84[AFR][1000 genomes]
rs1911546	1.00[AFR][1000 genomes]
rs2202677	1.00[AFR][1000 genomes]
rs4233309	0.89[CEU][hapmap]
rs5025775	0.82[CEU][hapmap]
rs6540886	0.81[CEU][hapmap]
rs6540887	0.81[CEU][hapmap]
rs6670661	0.82[CEU][hapmap]
rs7522552	0.93[CEU][hapmap];0.95[JPT][hapmap]
rs7539365	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs756174	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832537	chr1:215509026-215705105	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1796390	chr1:215561548-215799074	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215568400-215572600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:215570400-215571000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:215570400-215571000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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