Variant report

Variant	rs2089763
Chromosome Location	chr4:86759738-86759739
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:86758093..86760173-chr4:86804562..86807184,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10516758	1.00[ASN][1000 genomes]
rs10516759	1.00[ASN][1000 genomes]
rs10516760	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10516761	1.00[ASN][1000 genomes]
rs10516762	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13125320	1.00[ASN][1000 genomes]
rs1452681	1.00[ASN][1000 genomes]
rs17395020	1.00[ASN][1000 genomes]
rs17395132	1.00[ASN][1000 genomes]
rs17395223	1.00[ASN][1000 genomes]
rs17399123	1.00[ASN][1000 genomes]
rs17399707	1.00[ASN][1000 genomes]
rs17399908	1.00[ASN][1000 genomes]
rs17400185	1.00[ASN][1000 genomes]
rs2601870	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3114384	1.00[ASN][1000 genomes]
rs343847	1.00[ASN][1000 genomes]
rs345328	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs345330	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs345334	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs345340	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs345355	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs345359	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55937611	1.00[ASN][1000 genomes]
rs56305839	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71599426	1.00[ASN][1000 genomes]
rs71599428	1.00[ASN][1000 genomes]
rs745892	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv879518	chr4:86739805-86778943	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv830000	chr4:86745341-86909059	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv470049	chr4:86750699-86776488	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86737600-86763200	Weak transcription	Primary B cells from cord blood	blood
2	chr4:86749400-86761600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:86749400-86787600	Weak transcription	Pancreas	Pancrea
4	chr4:86749600-86761200	Weak transcription	Ovary	ovary
5	chr4:86749600-86763600	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr4:86750000-86809200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr4:86751200-86761400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr4:86751800-86761600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr4:86753200-86761200	Weak transcription	Stomach Mucosa	stomach
10	chr4:86754800-86761200	Weak transcription	HUVEC	blood vessel
11	chr4:86754800-86761400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr4:86757200-86760200	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr4:86758000-86763600	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr4:86758200-86760000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr4:86758400-86761400	Weak transcription	HSMM	muscle
16	chr4:86758600-86763800	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr4:86759000-86761200	Weak transcription	Fetal Muscle Leg	muscle
18	chr4:86759000-86762400	Weak transcription	Primary B cells from peripheral blood	blood
19	chr4:86759000-86763400	Weak transcription	NHLF	lung
20	chr4:86759000-86763400	Weak transcription	Osteobl	bone
21	chr4:86759200-86761400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr4:86759400-86761200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr4:86759400-86761400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr4:86759400-86761400	Weak transcription	HSMMtube	muscle
25	chr4:86759400-86761400	Weak transcription	NHDF-Ad	bronchial
26	chr4:86759400-86763400	Weak transcription	Adipose Nuclei	Adipose
27	chr4:86759400-86763800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr4:86759600-86760000	Weak transcription	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links