Variant report

Variant	rs2090851
Chromosome Location	chr12:51082254-51082255
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:51080928..51083785-chr12:51087182..51088712,2	MCF-7	breast:
2	chr12:51073792..51075875-chr12:51081650..51083302,2	K562	blood:
3	chr12:51080135..51083273-chr12:51084470..51087512,4	MCF-7	breast:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10459234	0.84[EUR][1000 genomes]
rs10459235	0.87[EUR][1000 genomes]
rs10506294	0.85[EUR][1000 genomes]
rs10506295	0.86[EUR][1000 genomes]
rs10747587	0.87[EUR][1000 genomes]
rs10783375	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10783382	0.83[EUR][1000 genomes]
rs10783383	0.87[EUR][1000 genomes]
rs10783384	0.86[EUR][1000 genomes]
rs10876066	0.82[ASN][1000 genomes]
rs10876069	0.90[ASN][1000 genomes]
rs10876075	0.81[EUR][1000 genomes]
rs10876076	0.81[EUR][1000 genomes]
rs11169515	0.83[EUR][1000 genomes]
rs11169523	0.99[ASN][1000 genomes]
rs11169524	0.80[ASN][1000 genomes]
rs11169528	0.87[EUR][1000 genomes]
rs11169532	0.86[EUR][1000 genomes]
rs11169537	0.86[EUR][1000 genomes]
rs11169538	0.81[EUR][1000 genomes]
rs11169539	0.81[EUR][1000 genomes]
rs11615933	0.87[EUR][1000 genomes]
rs12231309	0.80[EUR][1000 genomes]
rs12231317	0.81[EUR][1000 genomes]
rs12307178	0.82[ASN][1000 genomes]
rs12425362	0.82[ASN][1000 genomes]
rs12427378	0.99[ASN][1000 genomes]
rs12580051	0.81[EUR][1000 genomes]
rs12809086	0.85[EUR][1000 genomes]
rs1316442	0.95[ASN][1000 genomes]
rs1316607	0.96[ASN][1000 genomes]
rs17124930	0.86[EUR][1000 genomes]
rs1967576	0.92[ASN][1000 genomes]
rs2090852	0.80[ASN][1000 genomes]
rs2139930	0.80[ASN][1000 genomes]
rs2243571	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2264734	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2684908	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2700478	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34553264	0.80[ASN][1000 genomes]
rs35845404	0.81[EUR][1000 genomes]
rs3742063	0.81[EUR][1000 genomes]
rs3742064	0.81[EUR][1000 genomes]
rs3825402	0.81[EUR][1000 genomes]
rs3935138	0.85[EUR][1000 genomes]
rs4238108	0.85[EUR][1000 genomes]
rs4388959	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4617661	0.82[EUR][1000 genomes]
rs4768847	0.82[EUR][1000 genomes]
rs4768858	0.81[EUR][1000 genomes]
rs4768904	0.80[EUR][1000 genomes]
rs4768906	0.86[EUR][1000 genomes]
rs4768907	0.86[EUR][1000 genomes]
rs4768911	0.81[EUR][1000 genomes]
rs4768912	0.85[EUR][1000 genomes]
rs4768913	0.85[EUR][1000 genomes]
rs4768914	0.81[EUR][1000 genomes]
rs61926275	0.87[EUR][1000 genomes]
rs6580756	0.82[EUR][1000 genomes]
rs6580761	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67092086	0.85[EUR][1000 genomes]
rs7133160	0.97[ASN][1000 genomes]
rs7137845	0.80[ASN][1000 genomes]
rs7298661	0.92[ASN][1000 genomes]
rs7298665	0.96[ASN][1000 genomes]
rs7302435	0.96[ASN][1000 genomes]
rs7305375	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7316864	0.85[EUR][1000 genomes]
rs7397999	0.85[EUR][1000 genomes]
rs7965652	0.95[ASN][1000 genomes]
rs876078	0.81[EUR][1000 genomes]
rs876079	0.81[EUR][1000 genomes]
rs876080	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9788075	0.92[ASN][1000 genomes]
rs9788159	0.81[EUR][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51028400-51092400	Weak transcription	Gastric	stomach
2	chr12:51041800-51091400	Weak transcription	Pancreas	Pancrea
3	chr12:51049200-51108600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr12:51053000-51086200	Weak transcription	Psoas Muscle	Psoas
5	chr12:51053200-51092400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr12:51053800-51089200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr12:51057000-51089600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr12:51058600-51089000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr12:51059400-51089600	Weak transcription	Small Intestine	intestine
10	chr12:51060000-51101200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr12:51060200-51108200	Weak transcription	Stomach Mucosa	stomach
12	chr12:51062600-51091800	Strong transcription	Liver	Liver
13	chr12:51063200-51138600	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr12:51063600-51138800	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr12:51063600-51145400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr12:51063800-51085600	Strong transcription	Primary T cells from cord blood	blood
17	chr12:51064000-51109800	Strong transcription	Primary B cells from peripheral blood	blood
18	chr12:51064000-51127400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr12:51064800-51090000	Strong transcription	Primary neutrophils fromperipheralblood	blood
20	chr12:51064800-51095800	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr12:51067200-51082600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr12:51067200-51084600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr12:51067200-51085400	Strong transcription	Primary T helper cells PMA-I stimulated	--
24	chr12:51067400-51085400	Strong transcription	Primary B cells from cord blood	blood
25	chr12:51067400-51106200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr12:51067400-51120600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr12:51067400-51143600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr12:51067600-51142200	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr12:51068200-51095200	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr12:51068200-51106200	Strong transcription	Fetal Thymus	thymus
31	chr12:51068200-51141200	Strong transcription	Placenta	Placenta
32	chr12:51068200-51144000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr12:51068400-51095000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr12:51071000-51089400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr12:51071400-51083800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr12:51072000-51083800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr12:51072000-51089000	Weak transcription	NHDF-Ad	bronchial
38	chr12:51072200-51083000	Weak transcription	Rectal Smooth Muscle	rectum
39	chr12:51072200-51089200	Weak transcription	Fetal Brain Male	brain
40	chr12:51072600-51084400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr12:51073000-51090600	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr12:51074200-51084800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr12:51074200-51087800	Strong transcription	Fetal Intestine Large	intestine
44	chr12:51074200-51106000	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr12:51074600-51109800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr12:51074600-51139600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr12:51074800-51083800	Strong transcription	Sigmoid Colon	Sigmoid Colon
48	chr12:51075000-51083800	Strong transcription	Brain Anterior Caudate	brain
49	chr12:51075200-51098800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr12:51075800-51083800	Strong transcription	Skeletal Muscle Female	skeletal muscle

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