Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10948827	0.88[ASN][1000 genomes]
rs12526335	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12529259	0.84[ASN][1000 genomes]
rs1303838	0.84[ASN][1000 genomes]
rs13201322	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1648211	0.83[ASN][1000 genomes]
rs17828849	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1895835	0.84[ASN][1000 genomes]
rs3909649	0.88[ASN][1000 genomes]
rs4715462	0.88[ASN][1000 genomes]
rs567013	0.87[ASN][1000 genomes]
rs605743	0.83[ASN][1000 genomes]
rs683560	0.83[ASN][1000 genomes]
rs7450725	0.84[ASN][1000 genomes]
rs9464088	0.84[ASN][1000 genomes]
rs9464089	0.84[ASN][1000 genomes]
rs9464091	0.88[ASN][1000 genomes]
rs9464092	0.88[ASN][1000 genomes]
rs9464093	0.88[ASN][1000 genomes]
rs9474878	0.85[ASN][1000 genomes]
rs9474879	0.85[ASN][1000 genomes]
rs9474882	0.81[ASN][1000 genomes]
rs9474888	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv528901	chr6:54290333-54337130	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv427757	chr6:54296552-54507210	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54296400-54297600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search: