The 2.0 version of rSNPBase

Variant report

Variant rs209256
Chromosome Location chr1:76608018-76608019
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:76576600-76620000 Weak transcription Primary B cells from cord blood blood
2 chr1:76588200-76615600 Weak transcription Left Ventricle heart
3 chr1:76592600-76610800 Weak transcription Fetal Kidney kidney
4 chr1:76593000-76608200 Weak transcription Fetal Lung lung
5 chr1:76594600-76615400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
6 chr1:76598600-76609800 Weak transcription Fetal Stomach stomach
7 chr1:76599800-76620200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
8 chr1:76601800-76608200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
9 chr1:76604600-76608200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
10 chr1:76604800-76609200 Enhancers Brain Hippocampus Middle brain
11 chr1:76605000-76608800 Enhancers Brain Substantia Nigra brain
12 chr1:76605600-76608200 Enhancers iPS-18 Cell Line embryonic stem cell
13 chr1:76605800-76608200 Enhancers H1 Cell Line embryonic stem cell
14 chr1:76605800-76608200 Enhancers H9 Cell Line embryonic stem cell
15 chr1:76605800-76608200 Enhancers HUES6 Cell Line embryonic stem cell
16 chr1:76605800-76608200 Enhancers HUES64 Cell Line embryonic stem cell
17 chr1:76606200-76608800 Weak transcription Fetal Brain Male brain
18 chr1:76606200-76613400 Weak transcription Brain Anterior Caudate brain
19 chr1:76606200-76614800 Weak transcription Brain Angular Gyrus brain
20 chr1:76606200-76620000 Weak transcription Spleen Spleen
21 chr1:76606800-76608600 Weak transcription Fetal Intestine Large intestine
22 chr1:76606800-76608800 Weak transcription Fetal Intestine Small intestine
23 chr1:76607000-76608200 Enhancers ES-I3 Cell Line embryonic stem cell
24 chr1:76607000-76608200 Weak transcription Duodenum Mucosa Duodenum
25 chr1:76607000-76608400 Weak transcription Rectal Mucosa Donor 29 rectum
26 chr1:76607200-76609600 Weak transcription Stomach Mucosa stomach
27 chr1:76607400-76608200 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
28 chr1:76607600-76608400 Enhancers Brain Inferior Temporal Lobe brain
29 chr1:76607600-76608400 Enhancers Lung lung
30 chr1:76607600-76608600 Enhancers ES-UCSF4 Cell Line embryonic stem cell
31 chr1:76607600-76608600 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
32 chr1:76607600-76616000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
33 chr1:76607800-76608200 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
34 chr1:76607800-76608800 Weak transcription Adipose Nuclei Adipose
35 chr1:76607800-76609000 Enhancers Cortex derived primary cultured neurospheres brain
36 chr1:76608000-76608200 Enhancers iPS-15b Cell Line embryonic stem cell
37 chr1:76608000-76608200 Enhancers iPS DF 6.9 Cell Line embryonic stem cell
38 chr1:76608000-76608200 ZNF genes & repeats Aorta Aorta
39 chr1:76608000-76608400 Weak transcription Brain Cingulate Gyrus brain
40 chr1:76608000-76608800 Enhancers Placenta Amnion Placenta Amnion
41 chr1:76608000-76609200 Enhancers Sigmoid Colon Sigmoid Colon
42 chr1:76608000-76610000 Enhancers Right Atrium heart
43 chr1:76608000-76620200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015