Variant report

Variant	rs2092697
Chromosome Location	chr1:94321288-94321289
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 184 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:183)

rs_ID	r²[population]
rs10158125	0.80[EUR][1000 genomes]
rs10158155	0.80[EUR][1000 genomes]
rs10158448	0.80[EUR][1000 genomes]
rs10158745	0.80[EUR][1000 genomes]
rs10159000	0.93[ASN][1000 genomes]
rs10443194	0.80[EUR][1000 genomes]
rs10489601	0.80[EUR][1000 genomes]
rs10489607	0.93[ASN][1000 genomes]
rs10874811	0.92[ASN][1000 genomes]
rs10874812	0.93[ASN][1000 genomes]
rs11164977	0.80[EUR][1000 genomes]
rs11164979	0.80[EUR][1000 genomes]
rs11164980	0.80[EUR][1000 genomes]
rs11164981	0.80[EUR][1000 genomes]
rs11164983	0.80[EUR][1000 genomes]
rs11164984	0.80[EUR][1000 genomes]
rs11164985	0.80[EUR][1000 genomes]
rs11164986	0.80[EUR][1000 genomes]
rs11165003	0.80[EUR][1000 genomes]
rs11165005	0.87[AFR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11165007	0.80[EUR][1000 genomes]
rs11165014	0.89[AFR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11165015	0.80[EUR][1000 genomes]
rs11165017	0.88[AFR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11165031	0.94[ASN][1000 genomes]
rs11165034	0.93[ASN][1000 genomes]
rs11165037	0.91[ASN][1000 genomes]
rs12068168	0.86[ASN][1000 genomes]
rs12068345	0.93[ASN][1000 genomes]
rs12089163	0.94[ASN][1000 genomes]
rs12116529	0.80[EUR][1000 genomes]
rs12116907	0.80[EUR][1000 genomes]
rs12119101	0.80[EUR][1000 genomes]
rs12119150	0.80[EUR][1000 genomes]
rs12121389	0.80[EUR][1000 genomes]
rs12121513	0.80[EUR][1000 genomes]
rs12122176	0.80[EUR][1000 genomes]
rs12122406	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12122531	0.80[EUR][1000 genomes]
rs12122571	0.80[EUR][1000 genomes]
rs12123641	0.84[AFR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12124433	0.80[EUR][1000 genomes]
rs12126015	0.80[EUR][1000 genomes]
rs12126518	0.80[EUR][1000 genomes]
rs12126805	0.80[EUR][1000 genomes]
rs12129986	0.92[ASN][1000 genomes]
rs12130369	0.80[EUR][1000 genomes]
rs12130623	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12131163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12131247	0.93[ASN][1000 genomes]
rs12131932	0.80[EUR][1000 genomes]
rs12132025	0.80[EUR][1000 genomes]
rs12132181	0.80[EUR][1000 genomes]
rs12133653	0.80[EUR][1000 genomes]
rs12135991	0.93[ASN][1000 genomes]
rs12137698	0.89[AFR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12139144	0.80[EUR][1000 genomes]
rs12139561	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12140097	0.91[ASN][1000 genomes]
rs12140344	0.80[EUR][1000 genomes]
rs12140496	0.80[EUR][1000 genomes]
rs12141014	0.87[AFR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12141049	0.80[EUR][1000 genomes]
rs12141212	0.80[EUR][1000 genomes]
rs12141335	0.80[EUR][1000 genomes]
rs12141697	0.80[EUR][1000 genomes]
rs12142097	0.80[EUR][1000 genomes]
rs12143127	0.80[EUR][1000 genomes]
rs12143397	0.80[EUR][1000 genomes]
rs12143888	0.80[EUR][1000 genomes]
rs12143950	0.80[EUR][1000 genomes]
rs12144059	0.80[EUR][1000 genomes]
rs12144131	0.80[EUR][1000 genomes]
rs12144135	0.80[EUR][1000 genomes]
rs12144176	0.91[AFR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12144277	0.80[EUR][1000 genomes]
rs12240145	0.80[EUR][1000 genomes]
rs12401354	0.97[ASN][1000 genomes]
rs12402802	0.80[EUR][1000 genomes]
rs12402983	0.80[EUR][1000 genomes]
rs12404613	0.80[EUR][1000 genomes]
rs12405560	0.80[EUR][1000 genomes]
rs12407244	0.80[EUR][1000 genomes]
rs12407550	0.80[EUR][1000 genomes]
rs12407732	0.82[AFR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12407917	0.80[EUR][1000 genomes]
rs12407922	0.80[EUR][1000 genomes]
rs12408089	0.80[EUR][1000 genomes]
rs12408109	0.80[EUR][1000 genomes]
rs12408194	0.89[AFR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12408402	0.80[EUR][1000 genomes]
rs12408537	0.80[EUR][1000 genomes]
rs12408650	0.80[EUR][1000 genomes]
rs12408797	0.80[EUR][1000 genomes]
rs12409459	0.80[EUR][1000 genomes]
rs12409471	0.80[EUR][1000 genomes]
rs12410692	0.80[EUR][1000 genomes]
rs12410985	0.80[EUR][1000 genomes]
rs12410986	0.80[EUR][1000 genomes]
rs12411043	0.80[EUR][1000 genomes]
rs12411056	0.80[EUR][1000 genomes]
rs1473711	0.93[ASN][1000 genomes]
rs17100392	0.80[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs17110404	0.80[EUR][1000 genomes]
rs17110411	0.80[EUR][1000 genomes]
rs17110423	0.80[EUR][1000 genomes]
rs17110498	0.80[EUR][1000 genomes]
rs17110544	0.80[EUR][1000 genomes]
rs1851	0.80[EUR][1000 genomes]
rs1852	0.80[EUR][1000 genomes]
rs1985243	0.80[EUR][1000 genomes]
rs1989020	0.93[ASN][1000 genomes]
rs1989021	0.93[ASN][1000 genomes]
rs2017736	0.93[ASN][1000 genomes]
rs2143993	0.95[ASN][1000 genomes]
rs2273406	0.91[ASN][1000 genomes]
rs2391324	0.92[ASN][1000 genomes]
rs34761423	0.80[EUR][1000 genomes]
rs35674584	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3827715	0.92[ASN][1000 genomes]
rs3935320	0.80[EUR][1000 genomes]
rs3935334	0.80[EUR][1000 genomes]
rs41303970	0.91[ASN][1000 genomes]
rs4281327	0.80[EUR][1000 genomes]
rs4348734	0.80[EUR][1000 genomes]
rs4354545	0.80[EUR][1000 genomes]
rs4357541	0.80[EUR][1000 genomes]
rs4394664	0.80[EUR][1000 genomes]
rs4468172	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4573532	0.91[ASN][1000 genomes]
rs4598495	0.94[ASN][1000 genomes]
rs55897737	0.80[EUR][1000 genomes]
rs56339503	0.80[EUR][1000 genomes]
rs56670109	0.80[EUR][1000 genomes]
rs56797450	0.80[EUR][1000 genomes]
rs56872721	0.80[EUR][1000 genomes]
rs56939682	0.80[EUR][1000 genomes]
rs56981802	0.80[EUR][1000 genomes]
rs57288295	0.80[EUR][1000 genomes]
rs57387172	0.93[ASN][1000 genomes]
rs57397759	0.80[EUR][1000 genomes]
rs57451717	0.91[AFR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57665774	0.80[EUR][1000 genomes]
rs57787039	0.80[EUR][1000 genomes]
rs57812682	0.80[EUR][1000 genomes]
rs57962863	0.80[EUR][1000 genomes]
rs58880811	0.80[EUR][1000 genomes]
rs59972811	0.80[EUR][1000 genomes]
rs60120441	0.94[ASN][1000 genomes]
rs60299665	0.80[EUR][1000 genomes]
rs60661913	0.80[EUR][1000 genomes]
rs60699147	0.80[EUR][1000 genomes]
rs61024563	0.84[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs61244553	0.80[EUR][1000 genomes]
rs61667071	0.94[ASN][1000 genomes]
rs6672089	0.80[EUR][1000 genomes]
rs6680027	0.93[ASN][1000 genomes]
rs6681078	0.94[ASN][1000 genomes]
rs6684128	0.80[EUR][1000 genomes]
rs6691888	0.80[EUR][1000 genomes]
rs6692107	0.80[EUR][1000 genomes]
rs6696758	0.93[ASN][1000 genomes]
rs6699912	0.93[ASN][1000 genomes]
rs6700112	0.94[ASN][1000 genomes]
rs717912	0.80[EUR][1000 genomes]
rs718873	0.93[ASN][1000 genomes]
rs718874	0.93[ASN][1000 genomes]
rs718875	0.93[ASN][1000 genomes]
rs74101503	0.80[EUR][1000 genomes]
rs74101510	0.80[EUR][1000 genomes]
rs74101512	0.80[EUR][1000 genomes]
rs74101573	0.80[EUR][1000 genomes]
rs74101698	0.80[EUR][1000 genomes]
rs74101702	0.80[EUR][1000 genomes]
rs74104105	0.80[EUR][1000 genomes]
rs74104130	0.80[EUR][1000 genomes]
rs74104131	0.80[EUR][1000 genomes]
rs743119	0.91[ASN][1000 genomes]
rs7532168	0.80[EUR][1000 genomes]
rs7536714	0.93[ASN][1000 genomes]
rs7544883	0.80[EUR][1000 genomes]
rs761889	0.93[ASN][1000 genomes]
rs769211	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998755	chr1:94294015-94341712	Flanking Active TSS Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	121 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94314200-94332800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr1:94314200-94334200	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr1:94314200-94334400	Weak transcription	Brain Substantia Nigra	brain
4	chr1:94321200-94321600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr1:94321200-94322200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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