Variant report

Variant	rs2093800
Chromosome Location	chr14:56087148-56087149
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FBXO34-2	chr14:56085742-56087778	ucscGeneNc_uc001xci_2

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10146870	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10444721	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10483644	0.81[ASN][1000 genomes]
rs10483649	0.94[ASN][1000 genomes]
rs10483651	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12432887	0.80[ASN][1000 genomes]
rs12433592	0.95[ASN][1000 genomes]
rs12434609	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12434624	0.80[ASN][1000 genomes]
rs12434799	0.94[ASN][1000 genomes]
rs12587735	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12588172	0.87[EUR][1000 genomes]
rs12882850	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12891129	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12891526	0.90[AFR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12893162	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12895070	0.94[ASN][1000 genomes]
rs12895366	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12897227	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17128610	0.89[ASN][1000 genomes]
rs17128614	0.88[ASN][1000 genomes]
rs17128655	0.94[ASN][1000 genomes]
rs17128657	0.80[ASN][1000 genomes]
rs17253737	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17684916	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17684959	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17685650	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1951887	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1951889	0.81[ASN][1000 genomes]
rs1951890	0.87[ASN][1000 genomes]
rs2274076	0.81[ASN][1000 genomes]
rs2274078	0.80[ASN][1000 genomes]
rs2274079	0.80[ASN][1000 genomes]
rs2296183	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2341889	0.85[ASN][1000 genomes]
rs28581272	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34111199	0.81[ASN][1000 genomes]
rs34118806	0.94[ASN][1000 genomes]
rs34133022	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34184813	0.94[ASN][1000 genomes]
rs34408323	0.81[ASN][1000 genomes]
rs34706911	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34709110	0.81[ASN][1000 genomes]
rs34853759	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34931260	0.89[ASN][1000 genomes]
rs34982220	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35047443	0.88[ASN][1000 genomes]
rs35420484	0.88[ASN][1000 genomes]
rs35451981	0.88[ASN][1000 genomes]
rs35531912	0.86[ASN][1000 genomes]
rs35560341	0.95[ASN][1000 genomes]
rs35790844	0.94[ASN][1000 genomes]
rs4457912	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55760841	0.88[ASN][1000 genomes]
rs55927221	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61381603	0.95[ASN][1000 genomes]
rs6573051	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6573053	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6573054	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs68127620	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7150285	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7154548	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7156566	0.81[ASN][1000 genomes]
rs7158176	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72719463	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8006443	0.93[ASN][1000 genomes]
rs8007183	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8007832	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8008764	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8011252	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901961	chr14:55853724-56101879	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv901962	chr14:55862956-56101879	Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv901964	chr14:55871452-56101879	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv1051564	chr14:55895610-56130788	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv542103	chr14:55895610-56130788	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv901965	chr14:55976428-56101879	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv832804	chr14:56083850-56277632	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56077800-56087800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr14:56077800-56092000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr14:56078600-56148600	Weak transcription	Stomach Mucosa	stomach
4	chr14:56078800-56095400	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr14:56079000-56089000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr14:56079000-56091000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr14:56079200-56095200	Strong transcription	Primary T cells from cord blood	blood
8	chr14:56079800-56088400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:56079800-56111400	Strong transcription	Rectal Mucosa Donor 29	rectum
10	chr14:56080200-56097800	Strong transcription	Primary T cells fromperipheralblood	blood
11	chr14:56080600-56091800	Strong transcription	Rectal Mucosa Donor 31	rectum
12	chr14:56080800-56110800	Strong transcription	Primary T helper cells PMA-I stimulated	--
13	chr14:56081200-56090400	Strong transcription	Adipose Nuclei	Adipose
14	chr14:56081600-56090000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr14:56082200-56091000	Strong transcription	Placenta	Placenta
16	chr14:56082400-56090200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr14:56082400-56091800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr14:56082400-56092000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr14:56082600-56089600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr14:56082600-56091800	Strong transcription	Duodenum Smooth Muscle	Duodenum
21	chr14:56082800-56088000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
22	chr14:56082800-56088400	Strong transcription	Fetal Lung	lung
23	chr14:56082800-56090000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr14:56082800-56090200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr14:56082800-56090400	Strong transcription	Osteobl	bone
26	chr14:56082800-56090600	Strong transcription	NHEK	skin
27	chr14:56082800-56091800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr14:56083000-56088400	Strong transcription	Hela-S3	cervix
29	chr14:56083000-56091000	Strong transcription	HUVEC	blood vessel
30	chr14:56083200-56088200	Strong transcription	HSMM	muscle
31	chr14:56083200-56090000	Strong transcription	NH-A	brain
32	chr14:56083400-56088200	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr14:56083600-56088200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr14:56083800-56088000	Strong transcription	Fetal Brain Male	brain
35	chr14:56083800-56089200	Weak transcription	Fetal Heart	heart
36	chr14:56084000-56091800	Strong transcription	Muscle Satellite Cultured Cells	--
37	chr14:56084200-56087600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
38	chr14:56084200-56088000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr14:56084400-56088200	Strong transcription	Primary T killer memory cells from peripheral blood	blood
40	chr14:56084400-56088400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr14:56084600-56087600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr14:56084600-56088200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr14:56084600-56088200	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr14:56084600-56088200	ZNF genes & repeats	GM12878-XiMat	blood
45	chr14:56084600-56088400	Strong transcription	Brain Inferior Temporal Lobe	brain
46	chr14:56084800-56088600	Strong transcription	Placenta Amnion	Placenta Amnion
47	chr14:56085000-56087600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
48	chr14:56085000-56088400	Strong transcription	Colon Smooth Muscle	Colon
49	chr14:56085000-56091000	Strong transcription	Left Ventricle	heart
50	chr14:56085200-56087400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell

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