Variant report

Variant	rs2097667
Chromosome Location	chr7:104020973-104020974
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10953427	0.81[GIH][hapmap];0.81[JPT][hapmap]
rs12216592	0.81[JPT][hapmap]
rs12705208	0.85[GIH][hapmap]
rs1468143	0.81[JPT][hapmap]
rs2214084	0.81[JPT][hapmap]
rs2214087	0.81[GIH][hapmap];0.81[JPT][hapmap]
rs4236568	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7790817	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608067	chr7:103944237-104029408	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2097667	DLD	cis	cerebellum	SCAN
rs2097667	COG5	cis	cerebellum	SCAN
rs2097667	ZNHIT1	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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