Variant report

Variant	rs2098398
Chromosome Location	chr3:34727076-34727077
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1520631	0.91[AFR][1000 genomes]
rs1520643	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs4678482	0.81[ASN][1000 genomes]
rs4678698	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7647244	0.82[AMR][1000 genomes]
rs951973	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816528	chr3:34683998-34757534	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
2	esv3518503	chr3:34720759-34728145	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv3518504	chr3:34720759-34728145	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34722200-34734400	Weak transcription	Thymus	Thymus
2	chr3:34725400-34729000	Weak transcription	Fetal Intestine Large	intestine
3	chr3:34727000-34727200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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