Variant report

Variant	rs2105315
Chromosome Location	chr9:15766694-15766695
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 182 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:175)

rs_ID	r²[population]
rs1009468	0.81[JPT][hapmap]
rs10481557	0.82[CEU][hapmap];0.95[CHB][hapmap]
rs10732335	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10733301	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10733302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10733305	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs10738411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10738413	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10738417	0.82[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];0.81[AMR][1000 genomes]
rs10738419	0.86[CHB][hapmap]
rs10738420	0.85[CHB][hapmap]
rs10756674	0.82[CEU][hapmap]
rs10756677	0.83[CEU][hapmap]
rs10756679	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs10756687	0.82[CEU][hapmap]
rs10756688	0.82[CEU][hapmap]
rs10756689	0.83[CEU][hapmap]
rs10756690	0.83[CEU][hapmap]
rs10756692	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10756695	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs10756696	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10756697	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10756703	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10756704	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10756709	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10756710	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10756711	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10756714	0.91[CHB][hapmap]
rs10756715	0.90[CHB][hapmap];0.83[JPT][hapmap]
rs10756720	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs10756726	0.86[CHB][hapmap]
rs10810401	0.83[CEU][hapmap]
rs10810408	0.82[CEU][hapmap]
rs10810428	0.82[CEU][hapmap]
rs10810435	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs10810436	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10810439	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10810442	0.86[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10810446	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10810450	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10810451	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10810452	0.83[AMR][1000 genomes]
rs10810455	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs10810461	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs10810462	0.82[CHB][hapmap]
rs10810484	0.85[CHB][hapmap]
rs10810485	0.85[CHB][hapmap]
rs10810486	0.82[CHB][hapmap]
rs10810487	0.82[CHB][hapmap]
rs10810488	0.90[CHB][hapmap]
rs10810502	0.86[CHB][hapmap]
rs10810509	0.86[CHB][hapmap]
rs10962098	0.83[CEU][hapmap]
rs10962099	0.83[CEU][hapmap]
rs10962110	0.80[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];0.82[AFR][1000 genomes]
rs10962124	0.85[AMR][1000 genomes]
rs10962142	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10962149	0.90[CEU][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10962151	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10962156	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10962157	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10962158	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10962162	0.81[AMR][1000 genomes]
rs10962163	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10962167	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10962227	0.82[CHB][hapmap]
rs11515218	0.88[ASN][1000 genomes]
rs11521158	0.89[ASN][1000 genomes]
rs11562188	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12057012	0.99[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12346205	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12349973	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12378499	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12552653	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12553816	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs1328283	0.83[JPT][hapmap]
rs1328286	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs13287834	0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs13295778	0.83[ASN][1000 genomes]
rs13296276	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs13296360	1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs1341732	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs1341734	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs1341737	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1341738	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1355173	0.80[CEU][hapmap]
rs1359952	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs1396708	0.95[CHB][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs1410444	0.85[CHB][hapmap]
rs1509310	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1533040	0.82[CEU][hapmap]
rs1539172	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1539173	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1553728	0.80[CEU][hapmap]
rs1592099	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1927696	0.87[JPT][hapmap]
rs2055772	0.82[CEU][hapmap]
rs2096121	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs2105317	0.90[CEU][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2105318	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2105319	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2153727	0.81[JPT][hapmap]
rs2185663	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2211323	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2225181	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs2382534	0.80[CEU][hapmap]
rs2382538	0.88[AFR][1000 genomes]
rs2382540	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2891002	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2987009	0.86[CHB][hapmap]
rs2987010	0.90[CHB][hapmap]
rs2987011	0.95[CHB][hapmap]
rs3008666	0.86[CHB][hapmap]
rs3008681	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs3008753	0.86[CHB][hapmap]
rs4146290	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4146291	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4146293	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4472620	0.85[CHB][hapmap]
rs4740615	0.82[CEU][hapmap]
rs4740619	0.82[CEU][hapmap]
rs4740624	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4740625	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4740627	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4740628	0.90[CHB][hapmap];0.83[JPT][hapmap]
rs4741519	0.83[CEU][hapmap]
rs4741528	0.82[CEU][hapmap]
rs4741529	0.88[AFR][1000 genomes]
rs4741535	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4741542	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4741545	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes]
rs4741546	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4741548	0.83[JPT][hapmap]
rs4741552	0.86[CHB][hapmap]
rs4961713	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62571268	0.80[EUR][1000 genomes]
rs6474931	0.82[CEU][hapmap]
rs6474944	0.82[CEU][hapmap]
rs6474945	0.83[CEU][hapmap]
rs6474966	0.93[CEU][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6474967	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6474974	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7025669	0.83[CEU][hapmap]
rs7036172	0.83[CEU][hapmap]
rs7036674	0.84[CEU][hapmap]
rs7036775	0.81[EUR][1000 genomes]
rs7043770	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7045018	0.90[CEU][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs735962	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs7389629	0.82[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs7466716	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7466717	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7846970	0.90[ASN][1000 genomes]
rs7849380	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7853744	0.81[JPT][hapmap]
rs7857601	0.80[ASN][1000 genomes]
rs7859780	0.83[CEU][hapmap]
rs7860528	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7860755	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7860992	0.90[ASN][1000 genomes]
rs7861802	0.95[ASN][1000 genomes]
rs7863088	0.82[CEU][hapmap]
rs7866894	0.82[ASN][1000 genomes]
rs7869624	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs7872912	0.80[CEU][hapmap];0.80[EUR][1000 genomes]
rs7873776	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7874533	0.81[CEU][hapmap]
rs9298739	0.84[JPT][hapmap]
rs9406537	0.81[JPT][hapmap]
rs9407654	0.81[JPT][hapmap]
rs950234	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs955369	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs961117	0.85[CHB][hapmap]
rs9650685	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9886731	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv2752286	chr9:15578017-15794897	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv892635	chr9:15731775-15876507	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv528964	chr9:15760822-15875162	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15742600-15769600	Weak transcription	Psoas Muscle	Psoas
2	chr9:15756200-15790800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr9:15759200-15784400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr9:15763600-15774400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:15766000-15770600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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