Variant report

Variant	rs2106189
Chromosome Location	chr7:126628400-126628401
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1010517	0.92[CEU][hapmap]
rs10232276	1.00[CHB][hapmap]
rs10234281	0.92[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10236120	0.92[CEU][hapmap]
rs10236204	1.00[CEU][hapmap]
rs10236227	0.96[CEU][hapmap]
rs10275501	0.96[CEU][hapmap]
rs10487463	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1155597	0.84[ASN][1000 genomes]
rs1155656	0.85[ASN][1000 genomes]
rs11563513	0.88[CEU][hapmap]
rs11563801	0.96[CEU][hapmap]
rs1204563	0.86[ASN][1000 genomes]
rs1204569	0.84[ASN][1000 genomes]
rs12164089	0.92[CEU][hapmap]
rs1361965	0.92[CEU][hapmap]
rs1361968	0.92[CEU][hapmap]
rs1361975	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1419438	1.00[CEU][hapmap]
rs1419468	0.92[CEU][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1419469	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1419470	0.92[CEU][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1419471	0.92[CEU][hapmap]
rs1582255	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2022072	0.92[CEU][hapmap]
rs2067052	0.81[ASN][1000 genomes]
rs2072416	0.86[ASN][1000 genomes]
rs2188188	0.92[CEU][hapmap]
rs2237776	0.96[CEU][hapmap]
rs2518954	0.86[ASN][1000 genomes]
rs2535944	0.86[ASN][1000 genomes]
rs3808136	0.96[CEU][hapmap]
rs3808138	0.96[CEU][hapmap]
rs3808142	0.92[CEU][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4540333	0.92[CEU][hapmap]
rs4728057	0.92[CEU][hapmap]
rs6950713	0.92[CEU][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758132	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759562	chr7:126494789-126677843	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv427805	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv831121	chr7:126593363-126774413	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv889188	chr7:126620555-126646353	Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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