Variant report

Variant	rs211106
Chromosome Location	chr11:18058026-18058027
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:18056958..18058946-chr11:18069914..18072112,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10741734	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10832872	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10832874	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11024446	0.83[EUR][1000 genomes]
rs12292490	0.82[EUR][1000 genomes]
rs1401163	0.83[EUR][1000 genomes]
rs1401164	0.83[EUR][1000 genomes]
rs1518522	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1607395	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs169806	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1799913	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1800532	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2056246	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2071532	0.91[EUR][1000 genomes]
rs211107	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs211108	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2237907	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2237908	0.86[EUR][1000 genomes]
rs2299625	0.83[EUR][1000 genomes]
rs508924	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs517005	0.88[EUR][1000 genomes]
rs544437	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs546383	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs572940	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs593839	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs652458	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs654734	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs684302	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs685249	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs685657	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72862028	0.82[EUR][1000 genomes]
rs7933505	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs887242	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv897026	chr11:17823296-18084878	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs211106	SERGEF	Cis_1M	lymphoblastoid	RTeQTL
rs211106	SERGEF	cis	Muscle Skeletal	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18042600-18064600	Weak transcription	Aorta	Aorta

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