Variant report

Variant	rs2113439
Chromosome Location	chr7:137713846-137713847
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:137709286..137711862-chr7:137713310..137716482,3	MCF-7	breast:
2	chr7:137692957..137695430-chr7:137713449..137716116,2	K562	blood:
3	chr7:137705059..137708002-chr7:137713112..137715556,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000234639	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10243728	0.92[EUR][1000 genomes]
rs10954599	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11972734	0.81[CEU][hapmap]
rs11977965	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11980668	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13232124	0.81[CEU][hapmap]
rs13240736	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13245398	0.81[EUR][1000 genomes]
rs1424376	0.81[CEU][hapmap]
rs1424377	0.82[JPT][hapmap];0.83[YRI][hapmap]
rs1424378	0.82[JPT][hapmap]
rs2352137	0.95[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28377187	0.81[EUR][1000 genomes]
rs34080447	0.90[EUR][1000 genomes]
rs34970488	0.81[AMR][1000 genomes]
rs35610307	0.81[EUR][1000 genomes]
rs4732282	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4732283	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56083840	0.81[AMR][1000 genomes]
rs6944019	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6969540	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs713470	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs713471	0.81[AMR][1000 genomes]
rs730865	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9655905	0.81[EUR][1000 genomes]
rs998767	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv831151	chr7:137711447-137865471	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2113439	TTC26	cis	cerebellum	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137708200-137715000	Enhancers	Primary B cells from cord blood	blood
2	chr7:137708400-137714000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:137711000-137715200	Enhancers	Primary B cells from peripheral blood	blood
4	chr7:137711600-137714000	Enhancers	Primary hematopoietic stem cells	blood
5	chr7:137711600-137714200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr7:137711800-137714000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:137711800-137714000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr7:137712000-137714000	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr7:137712200-137714200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr7:137712600-137714200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr7:137712800-137714800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr7:137712800-137717600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr7:137713800-137714000	Flanking Active TSS	GM12878-XiMat	blood
14	chr7:137713800-137714400	Enhancers	H9 Cell Line	embryonic stem cell
15	chr7:137713800-137714400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr7:137713800-137714400	Enhancers	K562	blood
17	chr7:137713800-137715000	Enhancers	HUES48 Cell Line	embryonic stem cell

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