Variant report

Variant	rs2113996
Chromosome Location	chr4:143418661-143418662
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10011782	0.94[EUR][1000 genomes]
rs11947710	1.00[CEU][hapmap]
rs12108640	0.93[EUR][1000 genomes]
rs1425531	0.92[EUR][1000 genomes]
rs1425533	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1425536	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1425537	0.93[EUR][1000 genomes]
rs17016306	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1834391	0.95[EUR][1000 genomes]
rs2113997	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2322795	0.93[EUR][1000 genomes]
rs2874841	0.92[EUR][1000 genomes]
rs2874865	0.95[EUR][1000 genomes]
rs28822497	0.91[EUR][1000 genomes]
rs3844178	0.94[EUR][1000 genomes]
rs4975308	0.93[EUR][1000 genomes]
rs60924405	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs713071	0.94[EUR][1000 genomes]
rs976564	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2762467	chr4:143412932-143420262	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143415400-143419000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr4:143418400-143419000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr4:143418400-143419600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr4:143418600-143419200	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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