Variant report

Variant	rs211605
Chromosome Location	chr6:133698217-133698218
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs211606	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs211607	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs211608	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs211609	0.82[YRI][hapmap]
rs211627	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9373051	0.82[JPT][hapmap]
rs9375957	0.85[CEU][hapmap];0.85[JPT][hapmap]
rs9385645	0.85[CEU][hapmap];0.82[CHD][hapmap];0.85[JPT][hapmap]
rs9389071	0.85[CEU][hapmap];0.82[CHD][hapmap]
rs9483577	0.85[CEU][hapmap];0.85[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs211605	ENPP1	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133684600-133717800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:133691400-133700200	Weak transcription	Psoas Muscle	Psoas
3	chr6:133691400-133700800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:133691600-133701200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr6:133698000-133698600	Active TSS	Skeletal Muscle Female	skeletal muscle
6	chr6:133698000-133699400	Enhancers	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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