Variant report

Variant	rs2119458
Chromosome Location	chr11:76615116-76615117
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76569547..76573272-chr11:76612099..76615969,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000078124	Chromatin interaction

Extended variants
information (count: 193 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:192)

rs_ID	r²[population]
rs1025815	0.85[EUR][1000 genomes]
rs10736811	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10736812	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10751262	0.85[EUR][1000 genomes]
rs10751263	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10751264	0.84[EUR][1000 genomes]
rs10751270	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10751271	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10793205	0.85[EUR][1000 genomes]
rs10793206	0.83[EUR][1000 genomes]
rs10793223	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10793224	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10793225	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10793226	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10793227	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10793228	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10793229	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10793230	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10793231	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10793232	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10899297	0.81[EUR][1000 genomes]
rs10899298	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10899301	0.84[EUR][1000 genomes]
rs10899302	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10899303	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10899305	0.84[EUR][1000 genomes]
rs10899307	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10899308	0.85[EUR][1000 genomes]
rs10899310	0.82[EUR][1000 genomes]
rs10899311	0.82[EUR][1000 genomes]
rs10899312	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10899313	0.82[EUR][1000 genomes]
rs10899315	0.84[EUR][1000 genomes]
rs10899316	0.83[EUR][1000 genomes]
rs10899333	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10899340	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899341	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899343	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10899344	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11236999	0.82[EUR][1000 genomes]
rs11237031	0.80[AFR][1000 genomes]
rs11237052	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12223659	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12279946	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12286501	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12286600	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12292156	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12718490	0.85[EUR][1000 genomes]
rs12796913	0.82[EUR][1000 genomes]
rs1356455	0.81[EUR][1000 genomes]
rs1356456	0.82[EUR][1000 genomes]
rs1474087	0.84[EUR][1000 genomes]
rs1517905	0.85[EUR][1000 genomes]
rs1517906	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1517907	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1517908	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1517909	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1517910	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1589126	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1607287	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1816748	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1850544	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1878630	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1945083	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1945086	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1965151	0.85[EUR][1000 genomes]
rs1969315	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1973714	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1980204	0.83[EUR][1000 genomes]
rs2043986	0.85[EUR][1000 genomes]
rs2090524	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2119456	0.82[EUR][1000 genomes]
rs2119457	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2156770	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2165404	0.85[EUR][1000 genomes]
rs2203755	0.83[EUR][1000 genomes]
rs2372386	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2372388	0.83[EUR][1000 genomes]
rs2826	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3740764	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3740765	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3740767	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3781697	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3824889	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3851191	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3914687	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4145048	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4379869	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4457775	0.83[EUR][1000 genomes]
rs4460836	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4471450	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4479014	0.83[EUR][1000 genomes]
rs4488228	0.83[EUR][1000 genomes]
rs4488229	0.83[EUR][1000 genomes]
rs4604914	0.83[EUR][1000 genomes]
rs4944128	0.81[EUR][1000 genomes]
rs4944129	0.81[EUR][1000 genomes]
rs4944131	0.82[ASN][1000 genomes]
rs4944132	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4944134	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4945115	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4945116	0.84[EUR][1000 genomes]
rs4945118	0.85[EUR][1000 genomes]
rs4945119	0.85[EUR][1000 genomes]
rs4945127	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4945129	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4945131	0.90[ASN][1000 genomes]
rs4945132	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4945133	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs591043	0.87[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6592675	0.85[AMR][1000 genomes]
rs6592676	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6592677	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6592678	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6592679	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6592680	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6592682	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6592683	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6592689	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6592690	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6592691	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6592692	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6592693	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6592694	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7103308	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7103500	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7105694	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7105895	0.80[AMR][1000 genomes]
rs7106611	0.82[EUR][1000 genomes]
rs7106625	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7107505	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7110305	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7110532	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7113282	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7113647	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7113778	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7114827	0.83[EUR][1000 genomes]
rs7115092	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7116513	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7116800	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7117545	0.82[EUR][1000 genomes]
rs7117682	0.82[EUR][1000 genomes]
rs7118762	0.85[EUR][1000 genomes]
rs7119361	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7119492	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7120215	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7121273	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7121920	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7123496	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7123694	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7123723	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7126666	0.82[EUR][1000 genomes]
rs7127936	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7128038	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7129388	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7924605	0.82[EUR][1000 genomes]
rs7924613	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7925135	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7925652	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7925774	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7926122	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7926409	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7927367	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7927658	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7927731	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7930307	0.82[EUR][1000 genomes]
rs7931561	0.84[AMR][1000 genomes]
rs7931646	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7931869	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7931894	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7932288	0.82[AMR][1000 genomes]
rs7933248	0.82[EUR][1000 genomes]
rs7933351	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7937883	0.82[EUR][1000 genomes]
rs7940782	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7940972	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7942646	0.82[EUR][1000 genomes]
rs7943913	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7947809	0.82[EUR][1000 genomes]
rs7949041	0.85[EUR][1000 genomes]
rs7950001	0.82[ASN][1000 genomes]
rs7951501	0.84[EUR][1000 genomes]
rs9326485	0.82[EUR][1000 genomes]
rs938809	0.84[EUR][1000 genomes]
rs938810	0.85[EUR][1000 genomes]
rs949339	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs949340	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs963704	0.82[EUR][1000 genomes]
rs963705	0.81[EUR][1000 genomes]
rs964521	0.82[EUR][1000 genomes]
rs9666315	0.82[EUR][1000 genomes]
rs9666322	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518920	chr11:76573016-76637651	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76597000-76631000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:76600800-76616800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:76600800-76617200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr11:76601400-76617000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr11:76608800-76622600	Weak transcription	Left Ventricle	heart
6	chr11:76610400-76615400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr11:76613000-76615400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:76613200-76615600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr11:76613400-76615400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr11:76613400-76615600	Enhancers	H1 Cell Line	embryonic stem cell
11	chr11:76613600-76631200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:76613800-76618600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr11:76613800-76622200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr11:76613800-76622600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr11:76614000-76617200	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr11:76614600-76615400	Weak transcription	Small Intestine	intestine
17	chr11:76614800-76615200	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr11:76614800-76615600	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr11:76614800-76617000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr11:76615000-76615600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr11:76615000-76616800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:76615000-76617000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:76615000-76617000	Weak transcription	HMEC	breast
24	chr11:76615000-76620200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links