Variant report

Variant	rs2120158
Chromosome Location	chr4:143619586-143619587
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:143274014..143275963-chr4:143618160..143619947,2	MCF-7	breast:
2	chr4:143393327..143398147-chr4:143615863..143619957,7	MCF-7	breast:
3	chr4:143393259..143398108-chr4:143615372..143620802,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1031104	0.90[CHB][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.81[JPT][hapmap];0.95[MEX][hapmap];0.82[YRI][hapmap];0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10857397	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10857399	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs11100754	0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs1116690	0.81[ASN][1000 genomes]
rs11723809	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11942731	0.81[YRI][hapmap]
rs11943397	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11944455	0.85[YRI][hapmap];0.84[ASN][1000 genomes]
rs12500698	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12644329	0.82[ASN][1000 genomes]
rs13102191	0.88[ASN][1000 genomes]
rs13109603	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13109664	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13114452	0.94[ASN][1000 genomes]
rs13119090	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13125853	0.92[ASN][1000 genomes]
rs13133181	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1364921	0.92[ASN][1000 genomes]
rs1364922	0.83[ASN][1000 genomes]
rs1364925	0.93[ASW][hapmap];0.83[CHB][hapmap];0.83[CHD][hapmap];0.87[JPT][hapmap];0.81[LWK][hapmap];0.95[MEX][hapmap];0.92[YRI][hapmap];0.80[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1373032	0.81[ASN][1000 genomes]
rs1373041	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1441417	0.90[CHB][hapmap]
rs1443185	0.83[ASN][1000 genomes]
rs1443186	0.83[ASN][1000 genomes]
rs1443187	0.88[CHB][hapmap];0.84[MEX][hapmap];0.82[ASN][1000 genomes]
rs1443191	0.83[CEU][hapmap];0.83[CHB][hapmap];0.87[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17016768	0.81[CHB][hapmap]
rs1899565	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs191762	0.81[JPT][hapmap]
rs2017146	0.81[ASW][hapmap];0.83[CHB][hapmap];0.89[CHD][hapmap];0.87[JPT][hapmap];0.95[MEX][hapmap];0.92[YRI][hapmap];0.92[ASN][1000 genomes]
rs2083781	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2165820	0.84[CEU][hapmap];0.83[CHB][hapmap];0.87[JPT][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2197216	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2217017	0.80[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2874870	0.87[ASW][hapmap];0.82[CHB][hapmap];0.89[CHD][hapmap];0.87[JPT][hapmap];0.89[MEX][hapmap];0.85[YRI][hapmap];0.88[ASN][1000 genomes]
rs2874871	0.82[CHB][hapmap];0.87[JPT][hapmap];0.92[YRI][hapmap];0.90[ASN][1000 genomes]
rs331945	0.81[CHB][hapmap]
rs4690698	0.83[GIH][hapmap]
rs4690699	0.93[GIH][hapmap];0.81[JPT][hapmap];0.84[MEX][hapmap];0.81[ASN][1000 genomes]
rs61371792	0.81[ASN][1000 genomes]
rs6537123	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6537124	0.93[GIH][hapmap];0.81[JPT][hapmap]
rs6537129	0.81[CHB][hapmap]
rs6811022	0.81[JPT][hapmap]
rs6830053	0.90[CHB][hapmap];0.81[JPT][hapmap];0.82[YRI][hapmap];0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6830886	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6831966	0.80[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6839158	0.90[CHB][hapmap]
rs6839894	0.85[ASN][1000 genomes]
rs6852570	0.81[JPT][hapmap]
rs7434705	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7441478	0.85[ASN][1000 genomes]
rs7656375	0.81[CHB][hapmap]
rs7663475	0.81[CHB][hapmap]
rs7666140	0.81[CHB][hapmap]
rs7680076	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7680631	0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7695514	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7698691	0.82[ASN][1000 genomes]
rs978361	0.81[CHB][hapmap];0.83[CHD][hapmap]
rs979194	0.89[YRI][hapmap];0.83[ASN][1000 genomes]
rs979195	0.83[ASN][1000 genomes]
rs979196	0.83[ASN][1000 genomes]
rs9994364	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3467400	chr4:143615840-143621513	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3467401	chr4:143615840-143621513	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv441917	chr4:143615874-143619949	Flanking Active TSS Weak transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv19572	chr4:143616010-143621320	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143615800-143620200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chr4:143616000-143620600	Enhancers	Primary T killer memory cells from peripheral blood	blood
3	chr4:143616000-143628800	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr4:143616400-143620200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr4:143616800-143621000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr4:143616800-143621600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr4:143616800-143629600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr4:143617000-143624200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr4:143617800-143620400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr4:143617800-143621200	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr4:143617800-143626400	Weak transcription	Psoas Muscle	Psoas
12	chr4:143618000-143619800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr4:143618000-143624800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr4:143618000-143625000	Weak transcription	Aorta	Aorta
15	chr4:143618000-143625200	Enhancers	Primary hematopoietic stem cells	blood
16	chr4:143618200-143621200	Enhancers	Thymus	Thymus
17	chr4:143618200-143621400	Enhancers	Primary T cells from cord blood	blood
18	chr4:143618600-143619600	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr4:143618600-143619600	Weak transcription	Fetal Heart	heart
20	chr4:143618600-143619600	Weak transcription	Fetal Thymus	thymus
21	chr4:143618600-143619800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr4:143618600-143624800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr4:143618800-143620000	Enhancers	Dnd41	blood
24	chr4:143619000-143622200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr4:143619400-143620600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--

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