Variant report

Variant	rs2120441
Chromosome Location	chr15:53160991-53160992
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:53094427..53097149-chr15:53159529..53161562,2	MCF-7	breast:
2	chr15:53127363..53130328-chr15:53159239..53161065,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259203	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12101294	1.00[EUR][1000 genomes]
rs12101773	1.00[TSI][hapmap]
rs12232305	0.83[ASN][1000 genomes]
rs16965222	0.81[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs16965329	1.00[TSI][hapmap]
rs16965332	1.00[TSI][hapmap]
rs17709181	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2120443	1.00[EUR][1000 genomes]
rs2456509	0.92[ASN][1000 genomes]
rs2456510	0.89[ASN][1000 genomes]
rs2456520	1.00[TSI][hapmap]
rs28403097	1.00[EUR][1000 genomes]
rs28415452	0.94[ASN][1000 genomes]
rs28449533	0.97[ASN][1000 genomes]
rs28489650	0.83[ASN][1000 genomes]
rs28515720	1.00[EUR][1000 genomes]
rs28556805	0.92[ASN][1000 genomes]
rs28566485	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28624935	1.00[EUR][1000 genomes]
rs28713382	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56346629	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56710422	1.00[EUR][1000 genomes]
rs57094771	1.00[EUR][1000 genomes]
rs57960122	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58028943	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59569753	1.00[EUR][1000 genomes]
rs60407782	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60882420	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61364465	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6493586	0.91[ASN][1000 genomes]
rs7173312	1.00[EUR][1000 genomes]
rs7176412	0.87[CHB][hapmap];0.80[CHD][hapmap];0.84[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs731607	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471245	chr15:52607262-53187165	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53160600-53161000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr15:53160600-53161000	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr15:53160600-53161200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr15:53160600-53161400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr15:53160800-53161000	Enhancers	H9 Cell Line	embryonic stem cell

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