Variant report

Variant	rs2123331
Chromosome Location	chr1:215220345-215220346
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10494989	0.83[CHB][hapmap];0.93[CHD][hapmap];0.80[ASN][1000 genomes]
rs10494991	0.90[ASW][hapmap];0.96[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10494992	0.96[CEU][hapmap];0.92[CHB][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10494993	1.00[CEU][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10779633	0.84[CHB][hapmap]
rs10779634	0.88[CHB][hapmap];0.82[ASN][1000 genomes]
rs10779635	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs10864148	0.85[TSI][hapmap]
rs1157493	0.85[TSI][hapmap]
rs12026832	0.80[CEU][hapmap];0.87[CHB][hapmap];0.98[CHD][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12038094	0.83[TSI][hapmap]
rs12131054	0.91[TSI][hapmap]
rs12141327	0.82[CHB][hapmap];0.98[CHD][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs1377173	0.83[CHB][hapmap];0.93[CHD][hapmap]
rs1377175	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs1377177	0.96[CEU][hapmap];0.92[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1452608	0.83[CHB][hapmap]
rs1452609	0.84[CHB][hapmap]
rs1452610	0.84[CHB][hapmap]
rs1584759	0.91[CHB][hapmap];0.95[CHD][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs1584760	0.85[ASN][1000 genomes]
rs17024148	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2262937	0.84[CHB][hapmap]
rs2601607	0.83[CHB][hapmap];0.93[CHD][hapmap]
rs2601610	0.84[CHB][hapmap]
rs2601612	0.84[CHB][hapmap]
rs2601613	0.84[CHB][hapmap]
rs2601614	0.87[CHB][hapmap]
rs2601618	0.83[CHB][hapmap];0.93[CHD][hapmap]
rs2601621	0.84[CHB][hapmap]
rs2601624	0.83[CHB][hapmap];0.93[CHD][hapmap]
rs2601625	0.87[CHB][hapmap];0.95[CHD][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs2601636	0.84[CHB][hapmap]
rs2601638	0.84[CHB][hapmap]
rs2601640	0.83[CHB][hapmap];0.91[CHD][hapmap]
rs2601641	0.84[CHB][hapmap]
rs2601646	0.80[CHB][hapmap]
rs2601650	0.93[CHD][hapmap]
rs2802643	0.84[CHB][hapmap]
rs2802644	0.83[CHB][hapmap];0.93[CHD][hapmap]
rs2802649	0.84[CHB][hapmap]
rs2802657	0.88[CHB][hapmap];0.84[ASN][1000 genomes]
rs2841574	0.87[CHB][hapmap];0.84[ASN][1000 genomes]
rs2841575	0.87[CHB][hapmap];0.95[CHD][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs2841577	0.88[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs2841581	0.82[ASN][1000 genomes]
rs2841587	0.82[ASN][1000 genomes]
rs2841591	0.81[ASN][1000 genomes]
rs2841592	0.81[ASN][1000 genomes]
rs2841595	0.80[CHB][hapmap]
rs2841597	0.84[CHB][hapmap]
rs2841598	0.83[CHB][hapmap];0.93[CHD][hapmap]
rs2841599	0.84[CHB][hapmap]
rs2841604	0.84[CHB][hapmap]
rs2841606	0.83[CHB][hapmap]
rs2841607	0.83[CHB][hapmap]
rs2841608	0.84[CHB][hapmap]
rs2841609	0.86[CHB][hapmap]
rs2841610	0.84[CHB][hapmap]
rs2841612	0.83[CHB][hapmap];0.93[CHD][hapmap]
rs2841613	0.84[CHB][hapmap]
rs2841615	0.91[CHB][hapmap];0.95[CHD][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs4655388	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468105	chr1:215167236-215248417	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549182	chr1:215167236-215248417	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215216200-215222000	Weak transcription	Osteobl	bone
2	chr1:215219000-215220600	Enhancers	NHDF-Ad	bronchial
3	chr1:215219200-215221200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr1:215220000-215220800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr1:215220200-215220800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr1:215220200-215221000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr1:215220200-215225400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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