Variant report

Variant	rs212432
Chromosome Location	chr7:105520040-105520041
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr7:105519929-105520133	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:105298862..105301241-chr7:105519713..105521805,2	K562	blood:
2	chr7:105514771..105518088-chr7:105519640..105522126,3	K562	blood:

Variant related genes	Relation type
ATXN7L1	TF binding region
ENSG00000128536	Chromatin interaction
ENSG00000146776	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17152243	1.00[CHB][hapmap];0.90[JPT][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs212431	0.87[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];0.98[TSI][hapmap];0.80[YRI][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs212433	0.87[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.98[TSI][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs212437	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027213	chr7:105438610-106022869	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv464669	chr7:105504201-105533735	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv608070	chr7:105504201-105533735	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105518000-105526000	Weak transcription	Small Intestine	intestine
2	chr7:105518200-105520600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
3	chr7:105518400-105520800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr7:105518400-105521000	Weak transcription	Esophagus	oesophagus
5	chr7:105518400-105562800	Weak transcription	Aorta	Aorta
6	chr7:105518600-105520400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:105518600-105521800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr7:105518600-105525600	Weak transcription	Left Ventricle	heart
9	chr7:105518800-105520400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr7:105518800-105520600	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr7:105518800-105521000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr7:105518800-105524200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr7:105518800-105530800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr7:105518800-105548200	Weak transcription	Right Atrium	heart
15	chr7:105519000-105520200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr7:105519000-105520400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr7:105519000-105520800	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr7:105519000-105521000	Weak transcription	Gastric	stomach
19	chr7:105519000-105521000	Weak transcription	Pancreas	Pancrea
20	chr7:105519000-105521600	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr7:105519000-105521800	Enhancers	Fetal Brain Male	brain
22	chr7:105519000-105532400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr7:105519000-105542600	Weak transcription	A549	lung
24	chr7:105519200-105520200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr7:105519200-105520400	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr7:105519200-105520400	Enhancers	Stomach Mucosa	stomach
27	chr7:105519200-105521000	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr7:105519400-105520200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr7:105519400-105520200	Enhancers	Fetal Intestine Small	intestine
30	chr7:105519400-105520600	Weak transcription	Fetal Heart	heart
31	chr7:105519400-105521200	Weak transcription	Liver	Liver
32	chr7:105519400-105525400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr7:105519400-105532400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr7:105519600-105520200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr7:105519600-105520400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr7:105519600-105522400	Enhancers	HepG2	liver
37	chr7:105519800-105520200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr7:105519800-105521000	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr7:105519800-105521000	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr7:105519800-105521000	Weak transcription	Rectal Smooth Muscle	rectum
41	chr7:105519800-105521200	Weak transcription	Colon Smooth Muscle	Colon
42	chr7:105519800-105521400	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr7:105519800-105525600	Weak transcription	Brain Anterior Caudate	brain
44	chr7:105519800-105528200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr7:105519800-105550600	Weak transcription	NHLF	lung
46	chr7:105520000-105520200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr7:105520000-105520200	Enhancers	HUES64 Cell Line	embryonic stem cell
48	chr7:105520000-105520200	Active TSS	Stomach Smooth Muscle	stomach
49	chr7:105520000-105520200	Active TSS	NHDF-Ad	bronchial
50	chr7:105520000-105520400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links