Variant report

Variant	rs2124442
Chromosome Location	chr2:182431577-182431578
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10203974	0.91[ASN][1000 genomes]
rs10204136	0.91[ASN][1000 genomes]
rs1037624	0.91[ASN][1000 genomes]
rs10490687	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1143676	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11675041	0.92[ASN][1000 genomes]
rs11675121	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11675166	0.92[ASN][1000 genomes]
rs11680383	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11686132	0.92[ASN][1000 genomes]
rs11686167	0.92[ASN][1000 genomes]
rs11687348	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11689738	0.91[ASN][1000 genomes]
rs12469449	0.92[ASN][1000 genomes]
rs13032116	0.92[ASN][1000 genomes]
rs1349197	0.92[ASN][1000 genomes]
rs1375488	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1375490	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1551033	0.91[ASN][1000 genomes]
rs17226637	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17304246	0.92[ASN][1000 genomes]
rs17304344	0.91[ASN][1000 genomes]
rs1823336	0.91[ASN][1000 genomes]
rs1839266	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1964511	0.91[ASN][1000 genomes]
rs1964512	0.91[ASN][1000 genomes]
rs2305583	0.92[ASN][1000 genomes]
rs2305584	0.91[ASN][1000 genomes]
rs2368212	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2887192	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3770104	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3770105	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3770107	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3770110	0.92[ASN][1000 genomes]
rs3770112	0.91[ASN][1000 genomes]
rs3770115	0.90[ASN][1000 genomes]
rs3816521	0.92[ASN][1000 genomes]
rs41265949	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4368293	0.92[ASN][1000 genomes]
rs4667316	0.91[ASN][1000 genomes]
rs56095368	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56136548	0.92[ASN][1000 genomes]
rs62189983	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62191451	0.92[ASN][1000 genomes]
rs62191453	0.92[ASN][1000 genomes]
rs6433921	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6433922	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6728886	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6747500	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6757312	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs767500	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs921257	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1014910	chr2:182375267-182544114	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv536065	chr2:182375267-182544114	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv869674	chr2:182409485-182468632	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182428400-182434800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr2:182430800-182431800	Enhancers	Fetal Brain Female	brain
3	chr2:182431000-182431800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:182431000-182431800	Enhancers	Fetal Brain Male	brain
5	chr2:182431200-182431800	Enhancers	HSMMtube	muscle
6	chr2:182431400-182432600	Weak transcription	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links