Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11796028	0.87[CHB][hapmap]
rs11796750	0.87[CHB][hapmap]
rs12832571	0.87[CHB][hapmap]
rs12839727	0.87[CHB][hapmap]
rs1936915	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1936917	0.87[CHB][hapmap]
rs2012661	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2124693	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2367174	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2886929	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4892408	0.87[CHB][hapmap]
rs4892580	0.87[CHB][hapmap]
rs5937369	0.87[CHB][hapmap]
rs5937384	0.87[CHB][hapmap]
rs5938060	0.87[CHB][hapmap]
rs5938075	0.87[CHB][hapmap]
rs5938116	0.87[CHB][hapmap]
rs5981861	0.87[CHB][hapmap]
rs5981875	0.87[CHB][hapmap]
rs5981886	0.87[CHB][hapmap]
rs6607563	0.87[CHB][hapmap]
rs6647139	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6647730	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6647731	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6647753	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7052314	0.87[CHB][hapmap]
rs7878508	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9887743	0.87[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534539	chrX:74669627-75200415	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:74667400-74701400	Weak transcription	Aorta	Aorta
2	chrX:74688400-74697200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chrX:74689400-74695400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chrX:74690600-74694200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chrX:74691000-74697400	Weak transcription	Primary hematopoietic stem cells	blood
6	chrX:74691400-74695200	Weak transcription	Dnd41	blood
7	chrX:74691600-74699800	Weak transcription	Left Ventricle	heart
8	chrX:74692600-74694200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
9	chrX:74692800-74693600	ZNF genes & repeats	Fetal Brain Male	brain
10	chrX:74692800-74694000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chrX:74692800-74694200	ZNF genes & repeats	Fetal Kidney	kidney
12	chrX:74692800-74694200	ZNF genes & repeats	Fetal Lung	lung
13	chrX:74693000-74693400	ZNF genes & repeats	Ovary	ovary

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