Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1010616	0.93[CEU][hapmap]
rs11796028	0.86[CEU][hapmap];0.87[CHB][hapmap]
rs11796750	0.88[CEU][hapmap];0.87[CHB][hapmap]
rs12839727	0.88[CEU][hapmap];0.87[CHB][hapmap]
rs1936915	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1936917	0.88[CEU][hapmap];0.87[CHB][hapmap]
rs2012661	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2124691	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2367174	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2886929	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4892408	0.86[CEU][hapmap];0.87[CHB][hapmap]
rs4892580	0.86[CEU][hapmap];0.87[CHB][hapmap]
rs5937369	0.81[CEU][hapmap];0.87[CHB][hapmap]
rs5937384	0.88[CEU][hapmap];0.87[CHB][hapmap]
rs5938060	0.87[CHB][hapmap]
rs5938075	0.86[CEU][hapmap];0.87[CHB][hapmap]
rs5938116	0.88[CEU][hapmap];0.87[CHB][hapmap]
rs5981861	0.86[CEU][hapmap];0.87[CHB][hapmap]
rs5981875	0.86[CEU][hapmap];0.87[CHB][hapmap]
rs5981886	0.86[CEU][hapmap];0.87[CHB][hapmap]
rs6607563	0.87[CHB][hapmap]
rs6647139	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6647730	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6647731	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6647753	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7052314	0.81[CEU][hapmap];0.87[CHB][hapmap]
rs7878508	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9887743	0.81[CEU][hapmap];0.87[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534539	chrX:74669627-75200415	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:74722600-74741800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chrX:74739000-74741400	Enhancers	Dnd41	blood
3	chrX:74740000-74741400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chrX:74740000-74741400	Weak transcription	Fetal Kidney	kidney
5	chrX:74740800-74742000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
6	chrX:74741000-74741400	Active TSS	Brain Germinal Matrix	brain
7	chrX:74741000-74741400	Enhancers	Colon Smooth Muscle	Colon
8	chrX:74741000-74741400	Flanking Active TSS	Fetal Brain Female	brain
9	chrX:74741000-74741800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chrX:74741200-74741400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
11	chrX:74741200-74741800	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chrX:74741200-74742000	Weak transcription	Brain Angular Gyrus	brain
13	chrX:74741200-74742000	Enhancers	Fetal Stomach	stomach
14	chrX:74741200-74742000	Enhancers	Rectal Smooth Muscle	rectum

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