Variant report

Variant	rs2124980
Chromosome Location	chr8:110473801-110473802
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs16879336	1.00[AMR][1000 genomes]
rs16879428	1.00[AMR][1000 genomes]
rs16879553	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs16879566	0.91[YRI][hapmap]
rs16879567	0.92[YRI][hapmap];1.00[AMR][1000 genomes]
rs16879571	0.92[YRI][hapmap]
rs16879636	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs1892762	1.00[AMR][1000 genomes]
rs1979299	1.00[AMR][1000 genomes]
rs1979300	1.00[AMR][1000 genomes]
rs55752435	1.00[AMR][1000 genomes]
rs56238419	1.00[AMR][1000 genomes]
rs56932873	1.00[AMR][1000 genomes]
rs57170073	1.00[AMR][1000 genomes]
rs57175707	0.85[AFR][1000 genomes]
rs57937650	1.00[AMR][1000 genomes]
rs59326650	1.00[AMR][1000 genomes]
rs59478583	1.00[AMR][1000 genomes]
rs59982879	1.00[AMR][1000 genomes]
rs60463599	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700649	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700650	1.00[AMR][1000 genomes]
rs73700652	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700655	1.00[AMR][1000 genomes]
rs73700858	1.00[AMR][1000 genomes]
rs73700860	1.00[AMR][1000 genomes]
rs73700867	1.00[AMR][1000 genomes]
rs73700869	1.00[AMR][1000 genomes]
rs73700876	1.00[AMR][1000 genomes]
rs73700886	1.00[AMR][1000 genomes]
rs73704006	1.00[AMR][1000 genomes]
rs73704009	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73704014	0.95[AFR][1000 genomes]
rs73704016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73704021	0.95[AFR][1000 genomes]
rs73704022	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891273	chr8:110219735-110475874	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1018510	chr8:110403496-110504029	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv891281	chr8:110450092-110558622	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110463200-110492400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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