Variant report

Variant	rs2127577
Chromosome Location	chr8:63504660-63504661
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:124913520..124914257-chr8:63504216..63505103,2	HCT-116	colon:

Variant related genes	Relation type
ENSG00000154473	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1031399	0.88[ASN][1000 genomes]
rs12549995	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1351365	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1383193	0.85[ASN][1000 genomes]
rs1383194	0.85[ASN][1000 genomes]
rs1451856	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1531657	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16929287	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16929302	0.84[EUR][1000 genomes]
rs1842353	0.86[ASN][1000 genomes]
rs2620876	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2957797	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2957799	0.85[ASN][1000 genomes]
rs4483149	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4738986	0.84[EUR][1000 genomes]
rs4738991	0.85[EUR][1000 genomes]
rs55651027	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58103443	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58261377	0.81[EUR][1000 genomes]
rs62509503	0.84[EUR][1000 genomes]
rs62509504	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62509505	0.84[EUR][1000 genomes]
rs6985441	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7812978	0.84[EUR][1000 genomes]
rs7840692	0.84[EUR][1000 genomes]
rs7844749	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs827683	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs827684	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs827687	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs827699	0.85[ASN][1000 genomes]
rs827705	0.88[ASN][1000 genomes]
rs827707	0.88[ASN][1000 genomes]
rs862386	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs936614	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs936616	0.84[EUR][1000 genomes]
rs936618	0.84[EUR][1000 genomes]
rs936619	0.83[EUR][1000 genomes]
rs936620	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs961829	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv890959	chr8:63449156-63515522	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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