Variant report
| Variant | rs2127579 |
|---|---|
| Chromosome Location | chr8:63583833-63583834 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:39)
| rs_ID | r2[population] |
|---|---|
| rs10112536 | 0.86[ASN][1000 genomes] |
| rs10216664 | 0.82[ASN][1000 genomes] |
| rs1351362 | 0.86[ASN][1000 genomes] |
| rs1383191 | 0.85[ASN][1000 genomes] |
| rs1471517 | 0.86[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1480189 | 0.87[ASN][1000 genomes] |
| rs1480190 | 0.87[ASN][1000 genomes] |
| rs1545792 | 0.86[ASN][1000 genomes] |
| rs1545793 | 0.86[ASN][1000 genomes] |
| rs1600546 | 0.82[ASN][1000 genomes] |
| rs1600547 | 0.82[ASN][1000 genomes] |
| rs16929305 | 0.82[ASN][1000 genomes] |
| rs16929353 | 0.88[ASN][1000 genomes] |
| rs16929378 | 0.88[ASN][1000 genomes] |
| rs1871590 | 0.82[ASN][1000 genomes] |
| rs2054531 | 0.81[ASN][1000 genomes] |
| rs2086378 | 0.83[ASN][1000 genomes] |
| rs2086379 | 0.86[ASN][1000 genomes] |
| rs2127580 | 0.82[ASN][1000 genomes] |
| rs2170123 | 0.82[ASN][1000 genomes] |
| rs4366077 | 0.88[ASN][1000 genomes] |
| rs4480117 | 0.82[ASN][1000 genomes] |
| rs4738985 | 0.82[ASN][1000 genomes] |
| rs4738993 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs57735770 | 0.88[ASN][1000 genomes] |
| rs62509502 | 0.82[ASN][1000 genomes] |
| rs6472039 | 0.86[ASN][1000 genomes] |
| rs7003224 | 0.85[ASN][1000 genomes] |
| rs7004154 | 0.82[ASN][1000 genomes] |
| rs7818033 | 0.82[ASN][1000 genomes] |
| rs7818203 | 0.82[ASN][1000 genomes] |
| rs7819367 | 0.88[ASN][1000 genomes] |
| rs7828272 | 0.87[ASN][1000 genomes] |
| rs7834422 | 0.82[ASN][1000 genomes] |
| rs7835370 | 0.82[ASN][1000 genomes] |
| rs7836079 | 0.82[ASN][1000 genomes] |
| rs936613 | 0.82[ASN][1000 genomes] |
| rs936615 | 0.82[ASN][1000 genomes] |
| rs936617 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1018879 | chr8:63281724-63937632 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv831340 | chr8:63515126-63702660 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv890960 | chr8:63516962-63629549 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:63572400-63602600 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
