Variant report

Variant	rs2128132
Chromosome Location	chr11:56068750-56068751
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:56068743-56068928	MCF10A-Er-Src	breast:	n/a	n/a
2	E2F4	chr11:56068696-56068823	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
OR8I1P	TF binding region

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10896163	0.89[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs10896227	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10896325	0.85[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10896345	0.95[ASN][1000 genomes]
rs11227964	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12277883	0.95[ASN][1000 genomes]
rs12285921	0.92[ASN][1000 genomes]
rs1573512	0.95[ASN][1000 genomes]
rs1945228	0.95[ASN][1000 genomes]
rs2128139	0.89[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2128140	0.89[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2170442	0.96[EUR][1000 genomes]
rs2220001	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34434887	0.95[ASN][1000 genomes]
rs4420287	0.95[ASN][1000 genomes]
rs4939033	0.91[ASN][1000 genomes]
rs4939037	0.95[ASN][1000 genomes]
rs594113	0.93[ASN][1000 genomes]
rs597102	0.93[ASN][1000 genomes]
rs612885	0.93[ASN][1000 genomes]
rs615231	0.93[ASN][1000 genomes]
rs621826	0.93[ASN][1000 genomes]
rs624412	0.93[ASN][1000 genomes]
rs637202	0.93[ASN][1000 genomes]
rs647027	0.93[ASN][1000 genomes]
rs647058	0.93[ASN][1000 genomes]
rs6591233	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6591310	0.95[ASN][1000 genomes]
rs660788	0.93[ASN][1000 genomes]
rs675120	0.93[ASN][1000 genomes]
rs675991	0.93[ASN][1000 genomes]
rs683539	0.93[ASN][1000 genomes]
rs7105808	0.95[ASN][1000 genomes]
rs7116573	0.95[ASN][1000 genomes]
rs7126732	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7131637	0.93[ASN][1000 genomes]
rs7940239	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs871301	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975114	chr11:55751535-56124251	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv1044859	chr11:55900482-56121727	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
4	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
5	nsv832161	chr11:56046173-56166964	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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