Variant report

Variant	rs2129351
Chromosome Location	chr8:62073874-62073875
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11777469	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13249426	0.95[ASN][1000 genomes]
rs13253027	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13263981	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13264358	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13278769	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1367974	1.00[JPT][hapmap]
rs1469606	0.81[EUR][1000 genomes]
rs1486658	0.86[EUR][1000 genomes]
rs1486659	0.86[EUR][1000 genomes]
rs1817635	0.80[ASN][1000 genomes]
rs1946593	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2052993	1.00[JPT][hapmap]
rs2116467	0.82[EUR][1000 genomes]
rs2129348	0.81[EUR][1000 genomes]
rs2129349	0.86[EUR][1000 genomes]
rs2919303	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2919305	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2931292	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2931309	1.00[ASN][1000 genomes]
rs2931312	0.80[ASN][1000 genomes]
rs2931322	1.00[JPT][hapmap]
rs2931323	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2931346	0.80[ASN][1000 genomes]
rs2978492	0.80[ASN][1000 genomes]
rs2978498	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2978542	0.80[ASN][1000 genomes]
rs2978543	0.80[ASN][1000 genomes]
rs2978558	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs35741212	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35860978	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3852340	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4144413	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6981158	0.85[EUR][1000 genomes]
rs6981406	0.85[EUR][1000 genomes]
rs6983455	1.00[JPT][hapmap]
rs6997436	0.85[EUR][1000 genomes]
rs6997461	0.85[EUR][1000 genomes]
rs7008918	0.86[EUR][1000 genomes]
rs7014101	0.88[EUR][1000 genomes]
rs7017483	1.00[JPT][hapmap]
rs7017626	1.00[JPT][hapmap]
rs7830371	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs956969	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9650204	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9650205	1.00[JPT][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948922	chr8:61818964-62475097	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv465698	chr8:62036793-62179465	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv611426	chr8:62036793-62179465	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1026243	chr8:62039073-62101123	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv890949	chr8:62073346-62141341	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62063000-62084600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:62068200-62084200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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