Variant report

Variant	rs2132149
Chromosome Location	chr3:23267063-23267064
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:23266677..23268446-chr3:23270132..23272875,2	K562	blood:

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs1027380	0.86[ASN][1000 genomes]
rs11707450	0.90[CHB][hapmap];0.87[YRI][hapmap]
rs11711630	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11715035	0.90[CHB][hapmap];1.00[YRI][hapmap]
rs11715107	0.83[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13087416	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13095887	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1390083	0.87[CEU][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1495133	0.83[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1495134	0.87[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1552931	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1692619	0.90[CHB][hapmap];1.00[YRI][hapmap]
rs1695180	0.90[CHB][hapmap];0.87[YRI][hapmap]
rs17342342	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17402378	1.00[YRI][hapmap]
rs1874234	0.90[CHB][hapmap];0.87[YRI][hapmap]
rs1874502	0.89[CHB][hapmap];0.82[YRI][hapmap]
rs1874503	0.90[CHB][hapmap];0.87[YRI][hapmap]
rs2036044	0.90[CHB][hapmap];0.87[YRI][hapmap]
rs2036045	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[YRI][hapmap]
rs2047340	0.83[CEU][hapmap]
rs2055155	0.87[YRI][hapmap]
rs2055156	0.90[CHB][hapmap];1.00[YRI][hapmap]
rs2088129	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2101811	0.80[CHB][hapmap];0.87[YRI][hapmap]
rs2132145	0.83[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2132147	0.83[CEU][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2132148	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2173057	0.90[CHB][hapmap]
rs2201484	0.90[CHB][hapmap];0.87[YRI][hapmap]
rs2359755	0.85[CHB][hapmap];0.82[YRI][hapmap]
rs2359761	0.90[CHB][hapmap];0.87[YRI][hapmap]
rs36073188	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4293660	0.80[ASN][1000 genomes]
rs4334589	0.96[ASN][1000 genomes]
rs4858063	0.88[CHB][hapmap];0.82[YRI][hapmap]
rs4858065	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4858066	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4858070	0.86[CHB][hapmap];0.87[YRI][hapmap]
rs4858488	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4858490	1.00[YRI][hapmap]
rs4858495	0.90[CHB][hapmap];0.87[YRI][hapmap]
rs4858498	0.91[CEU][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4858499	0.85[YRI][hapmap]
rs4858507	0.90[CHB][hapmap];0.82[YRI][hapmap]
rs5023615	0.89[CHB][hapmap];0.87[YRI][hapmap]
rs6550760	0.84[CHB][hapmap];1.00[YRI][hapmap]
rs6769959	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6780388	1.00[CHB][hapmap]
rs6790185	0.87[CEU][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6790327	0.90[CHB][hapmap];0.87[YRI][hapmap]
rs6799861	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6801824	0.90[CHB][hapmap];0.87[YRI][hapmap]
rs6806387	0.83[CEU][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73149661	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7618910	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7629327	0.87[YRI][hapmap];0.85[ASN][1000 genomes]
rs7635882	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7643705	0.90[CHB][hapmap];0.87[YRI][hapmap]
rs7648425	0.87[YRI][hapmap];0.87[ASN][1000 genomes]
rs778463	0.90[CHB][hapmap];1.00[YRI][hapmap]
rs778493	0.83[CEU][hapmap]
rs903519	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs923996	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs931609	0.90[CHB][hapmap];1.00[YRI][hapmap]
rs9757330	0.90[CHB][hapmap];0.87[YRI][hapmap]
rs9758590	0.90[CHB][hapmap];0.87[YRI][hapmap]
rs9815299	0.90[CHB][hapmap];1.00[YRI][hapmap]
rs9826103	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9836135	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs9840015	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9844558	0.83[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9848331	0.87[YRI][hapmap];0.85[ASN][1000 genomes]
rs9848389	0.90[CHB][hapmap];0.82[YRI][hapmap]
rs9875910	0.80[CHB][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834636	chr3:23138653-23301443	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1014701	chr3:23257658-23416094	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23246400-23273400	Weak transcription	Aorta	Aorta
2	chr3:23249000-23273400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:23260800-23270400	Weak transcription	Psoas Muscle	Psoas
4	chr3:23260800-23273400	Weak transcription	Right Atrium	heart
5	chr3:23261000-23273400	Weak transcription	Ovary	ovary
6	chr3:23261000-23274400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr3:23261200-23272600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr3:23261400-23278200	Weak transcription	Brain Angular Gyrus	brain
9	chr3:23262600-23268000	Weak transcription	Thymus	Thymus
10	chr3:23264400-23269400	Weak transcription	Primary B cells from peripheral blood	blood
11	chr3:23265400-23282000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:23266200-23277800	Weak transcription	Fetal Thymus	thymus
13	chr3:23267000-23267400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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