Variant report

Variant	rs2136941
Chromosome Location	chr4:122105679-122105680
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10004021	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10518384	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17051299	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17051301	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2198317	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28648448	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34117851	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35283394	1.00[ASN][1000 genomes]
rs41278073	0.95[EUR][1000 genomes]
rs73843557	1.00[ASN][1000 genomes]
rs7693320	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1009395	chr4:121841442-122557363	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv537235	chr4:121841442-122557363	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv3386870	chr4:121867625-122208448	Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv879859	chr4:121892490-122438312	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv879860	chr4:122030864-122126808	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv817261	chr4:122085173-123020068	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:122103800-122106800	Weak transcription	GM12878-XiMat	blood
2	chr4:122104000-122105800	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr4:122104000-122106200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr4:122104000-122108400	Weak transcription	Hela-S3	cervix
5	chr4:122104200-122105800	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr4:122104600-122107800	Enhancers	Primary T cells from cord blood	blood
7	chr4:122104800-122106800	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr4:122104800-122108600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr4:122104800-122109600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr4:122104800-122109800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr4:122104800-122110000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr4:122104800-122110000	Weak transcription	Thymus	Thymus
13	chr4:122104800-122111400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr4:122105000-122108400	Weak transcription	Dnd41	blood
15	chr4:122105000-122110000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr4:122105000-122110200	Weak transcription	Fetal Thymus	thymus
17	chr4:122105600-122105800	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr4:122105600-122106400	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr4:122105600-122107000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr4:122105600-122109400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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