Variant report

Variant	rs2137309
Chromosome Location	chr15:77200396-77200397
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr15:77200344-77200751	HL-60	blood:	n/a	n/a
2	SPI1	chr15:77200390-77200659	GM12891	blood:	n/a	n/a
3	SPI1	chr15:77200390-77200670	GM12891	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77200395..77201988-chr15:77203691..77205731,2	K562	blood:

Variant related genes	Relation type
SCAPER	TF binding region

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10519151	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16968467	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16968532	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16968536	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16968557	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16968625	0.87[CEU][hapmap]
rs16968627	1.00[CHB][hapmap];0.82[MEX][hapmap]
rs2221866	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2277891	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs280025	0.92[ASN][1000 genomes]
rs3825892	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58908956	0.92[ASN][1000 genomes]
rs62027262	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62027263	1.00[EUR][1000 genomes]
rs62027268	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62027269	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62027270	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027271	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027272	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027273	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027274	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027276	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027279	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62028724	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62028726	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62028727	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62028729	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62028730	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62028733	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62028734	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62028735	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62028737	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62028743	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029174	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62029175	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029178	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029179	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029180	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029182	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029183	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029184	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029186	0.93[EUR][1000 genomes]
rs62029187	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029188	0.93[EUR][1000 genomes]
rs62029189	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029190	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029192	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029194	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029195	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029196	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029197	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029230	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029231	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029233	0.93[EUR][1000 genomes]
rs62029234	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029235	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029236	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029237	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029239	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029240	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029241	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62029245	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029247	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029248	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029249	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62029250	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6495214	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap]
rs7164654	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7171104	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7179043	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73455381	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73457158	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73457161	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8023896	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs8034637	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8042889	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs8043385	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv1803942	chr15:77151005-77210457	Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
5	esv2758388	chr15:77170550-77373448	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	esv2760041	chr15:77170550-77373448	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77198400-77202000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr15:77198400-77203800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr15:77198800-77200400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr15:77198800-77203600	Weak transcription	Placenta	Placenta
5	chr15:77199800-77200800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr15:77200000-77200600	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr15:77200200-77200800	Enhancers	Primary B cells from peripheral blood	blood

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