Variant report

Variant	rs2140480
Chromosome Location	chr9:110526109-110526110
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110399461..110401861-chr9:110524729..110526880,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10117695	0.93[AFR][1000 genomes]
rs10118587	0.82[AFR][1000 genomes]
rs10759258	0.84[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10979040	0.93[ASN][1000 genomes]
rs12337757	0.93[AFR][1000 genomes]
rs12339291	0.93[AFR][1000 genomes]
rs12343121	0.93[AFR][1000 genomes]
rs12347133	0.93[AFR][1000 genomes]
rs12348910	0.87[AFR][1000 genomes]
rs12348975	0.87[AFR][1000 genomes]
rs1330149	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1411357	1.00[ASW][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];0.87[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1467311	0.91[ASW][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.87[JPT][hapmap];1.00[LWK][hapmap];0.84[MKK][hapmap];0.90[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs17625771	0.87[YRI][hapmap];0.82[AFR][1000 genomes]
rs1831382	0.98[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1970014	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2104759	0.94[CHB][hapmap];0.80[JPT][hapmap];0.93[ASN][1000 genomes]
rs2140483	0.93[ASN][1000 genomes]
rs28376933	0.93[AFR][1000 genomes]
rs28399092	0.82[AFR][1000 genomes]
rs28784969	0.93[AFR][1000 genomes]
rs4979370	0.91[ASW][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];0.87[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs57874597	0.93[AFR][1000 genomes]
rs6477599	0.83[EUR][1000 genomes]
rs7860653	0.86[MKK][hapmap]
rs944172	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.97[TSI][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427850	chr9:110456613-110632324	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv428221	chr9:110456613-110632324	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv508561	chr9:110506336-110545367	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110518200-110544600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr9:110521600-110530400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr9:110523200-110535200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:110523600-110528000	Weak transcription	Left Ventricle	heart
5	chr9:110524000-110528000	Weak transcription	Right Atrium	heart
6	chr9:110524600-110529000	Weak transcription	Adipose Nuclei	Adipose

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