Variant report

Variant	rs2145663
Chromosome Location	chr9:17519917-17519918
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1885167	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2104098	0.83[EUR][1000 genomes]
rs2754310	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35193659	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892658	chr9:17041557-17532840	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv892661	chr9:17134245-17532840	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv613693	chr9:17147191-17710407	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv471287	chr9:17165698-17708814	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv466269	chr9:17165698-17710407	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv892668	chr9:17371690-17532840	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv892671	chr9:17378776-17610211	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
8	esv2422265	chr9:17396711-17598187	Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	nsv613700	chr9:17506782-17554647	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17519400-17521200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:17519600-17520000	Enhancers	Fetal Kidney	kidney
3	chr9:17519600-17520000	Enhancers	A549	lung
4	chr9:17519600-17520400	Active TSS	Stomach Smooth Muscle	stomach
5	chr9:17519600-17520600	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr9:17519600-17520600	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr9:17519600-17520600	Enhancers	NHLF	lung
8	chr9:17519600-17521800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr9:17519800-17520000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:17519800-17520000	Enhancers	Right Atrium	heart
11	chr9:17519800-17520000	Active TSS	HepG2	liver
12	chr9:17519800-17520000	Flanking Active TSS	Osteobl	bone
13	chr9:17519800-17520200	Flanking Active TSS	Liver	Liver
14	chr9:17519800-17520200	Flanking Active TSS	Fetal Lung	lung
15	chr9:17519800-17520600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:17519800-17520600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr9:17519800-17520600	Enhancers	Pancreas	Pancrea
18	chr9:17519800-17520800	Enhancers	H1 Cell Line	embryonic stem cell
19	chr9:17519800-17521400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr9:17519800-17521600	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr9:17519800-17521600	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr9:17519800-17521800	Enhancers	ES-I3 Cell Line	embryonic stem cell

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