Variant report

Variant	rs2147735
Chromosome Location	chr9:17658670-17658671
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1000770	0.95[CHB][hapmap]
rs10118522	0.95[CHB][hapmap]
rs10738482	0.91[CHB][hapmap]
rs10738485	0.95[CHB][hapmap]
rs10756896	0.90[CHB][hapmap]
rs10756910	0.95[CHB][hapmap];0.86[CHD][hapmap];0.82[MEX][hapmap]
rs10810817	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs10810818	0.85[ASN][1000 genomes]
rs10810819	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10810821	0.95[CHB][hapmap];0.82[CHD][hapmap];0.91[MEX][hapmap]
rs10810822	0.91[CHB][hapmap]
rs10810828	0.95[CHB][hapmap];0.87[MEX][hapmap]
rs10963190	0.91[CHB][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10963191	0.85[ASN][1000 genomes]
rs10963195	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10963210	0.91[CHB][hapmap]
rs1536064	0.90[CHB][hapmap]
rs1536065	0.86[CHB][hapmap]
rs1536066	0.95[CHB][hapmap]
rs2147729	0.83[ASN][1000 genomes]
rs2147736	0.86[CHB][hapmap]
rs2182083	0.80[ASN][1000 genomes]
rs2182084	0.91[CHB][hapmap]
rs2182085	0.86[CHB][hapmap];0.95[MEX][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2182086	0.82[CHB][hapmap]
rs2182090	0.86[CHB][hapmap]
rs2209433	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs2209435	0.91[CHB][hapmap]
rs2383044	0.95[CHB][hapmap]
rs3780232	0.95[CHB][hapmap];0.80[JPT][hapmap]
rs3780234	0.91[CHB][hapmap]
rs3780235	0.91[CHB][hapmap]
rs3780236	0.91[CHB][hapmap]
rs3808700	0.91[CHB][hapmap]
rs3808704	0.95[CHB][hapmap];0.80[EUR][1000 genomes]
rs3808707	0.95[CHB][hapmap]
rs3808708	0.95[CHB][hapmap]
rs3808709	0.95[CHB][hapmap];0.82[CHD][hapmap];0.80[JPT][hapmap];0.87[MEX][hapmap]
rs3808711	0.95[CHB][hapmap]
rs3808712	0.95[CHB][hapmap]
rs3808713	0.95[CHB][hapmap];0.80[JPT][hapmap]
rs3808714	0.91[CHB][hapmap]
rs3808716	0.95[CHB][hapmap]
rs3808717	0.95[CHB][hapmap]
rs3808718	0.86[CHB][hapmap]
rs3808719	0.85[CEU][hapmap];0.86[CHB][hapmap];0.89[EUR][1000 genomes]
rs3808720	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs3808721	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs3808723	0.86[CHB][hapmap]
rs3824383	0.90[CHB][hapmap];0.80[ASN][1000 genomes]
rs4418424	0.91[CHB][hapmap]
rs4578059	0.91[CHB][hapmap]
rs4601434	0.95[CHB][hapmap]
rs7020158	0.90[CHB][hapmap]
rs7021704	0.85[EUR][1000 genomes]
rs7021836	0.95[CHB][hapmap];0.85[ASN][1000 genomes]
rs7856894	0.91[CHB][hapmap]
rs7858624	0.94[CHB][hapmap]
rs7870919	0.91[CHB][hapmap]
rs7874762	0.91[CHB][hapmap]
rs7875460	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs961372	0.86[CHB][hapmap]
rs998599	0.95[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613693	chr9:17147191-17710407	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv471287	chr9:17165698-17708814	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv466269	chr9:17165698-17710407	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv892674	chr9:17631186-17699981	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv1016971	chr9:17648242-17720176	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv1021022	chr9:17649360-17723730	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2147735	IFNA8	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17656000-17660000	Weak transcription	Fetal Brain Female	brain
2	chr9:17657000-17659000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr9:17658400-17658800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:17658400-17659400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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