Variant report

Variant	rs2151221
Chromosome Location	chr6:12816578-12816579
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:12815318..12818170-chr6:12823391..12825679,3	MCF-7	breast:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1011188	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10434855	0.91[EUR][1000 genomes]
rs10498681	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12525116	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12525210	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12526812	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12528247	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12528721	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12530470	0.89[CEU][hapmap]
rs1332842	0.80[EUR][1000 genomes]
rs1332851	0.89[CEU][hapmap]
rs1571996	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs1572001	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16873301	0.81[CEU][hapmap]
rs17616767	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17617491	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17678734	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17679286	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2015761	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2876298	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs35278288	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs4285318	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4293998	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4577783	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4583985	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4711817	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4711856	0.80[EUR][1000 genomes]
rs4714931	0.90[CEU][hapmap];0.91[EUR][1000 genomes]
rs55764622	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55879442	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56244510	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56259669	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56270763	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58666803	0.87[EUR][1000 genomes]
rs60954427	0.87[EUR][1000 genomes]
rs6911996	0.89[CEU][hapmap]
rs6915585	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs73722820	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73722822	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73722823	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73722845	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73722849	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7768030	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs9357486	0.89[CEU][hapmap]
rs9369607	0.91[EUR][1000 genomes]
rs9369612	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs9381451	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs9463091	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9463093	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9463105	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9463114	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9463117	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9463119	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9463140	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9472484	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9472511	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9472512	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9472513	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9472514	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9472519	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9472520	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9472528	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9472549	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9472566	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs950719	0.80[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv830587	chr6:12769661-12939875	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv830588	chr6:12793530-12972493	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12814000-12819000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:12814200-12818600	Weak transcription	HSMMtube	muscle
3	chr6:12814600-12818400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:12814800-12818400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:12815200-12817200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:12815200-12818400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr6:12816000-12816600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr6:12816400-12816800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:12816400-12817000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin

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