Variant report

Variant	rs2152050
Chromosome Location	chr1:155906609-155906610
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:155893064..155900339-chr1:155902644..155906758,10	MCF-7	breast:
2	chr1:155901745..155905224-chr1:155906395..155909651,4	MCF-7	breast:
3	chr1:155903455..155906976-chr1:155930050..155931967,4	K562	blood:
4	chr1:155903455..155906976-chr1:155930050..155931967,3	K562	blood:
5	chr1:155906042..155908716-chr1:156034032..156036184,2	K562	blood:
6	chr1:155902649..155906864-chr1:155928278..155934368,7	MCF-7	breast:
7	chr1:155902799..155907084-chr1:156021354..156025347,11	K562	blood:
8	chr1:155906559..155908102-chr1:155919575..155922170,2	K562	blood:
9	chr1:155906562..155909421-chr1:155978385..155980354,2	K562	blood:
10	chr1:155906141..155908097-chr1:155950003..155952687,2	K562	blood:
11	chr1:155902066..155906841-chr1:156030418..156033688,4	MCF-7	breast:
12	chr1:155905943..155908716-chr1:156034684..156037683,2	K562	blood:
13	chr1:155903347..155907384-chr1:155909974..155912355,7	K562	blood:
14	chr1:155902651..155906027-chr1:155906064..155909646,10	K562	blood:
15	chr1:155904710..155906723-chr1:155922247..155924795,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000173080	Chromatin interaction
ENSG00000160803	Chromatin interaction
ENSG00000132698	Chromatin interaction
ENSG00000252808	Chromatin interaction
ENSG00000116586	Chromatin interaction
ENSG00000132680	Chromatin interaction
ENSG00000116584	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2152051	0.94[AFR][1000 genomes]
rs550092	0.83[AFR][1000 genomes]
rs605472	0.90[AFR][1000 genomes]
rs6687169	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
2	nsv916198	chr1:155804210-156403997	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	428 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155904800-155909200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr1:155904800-155910400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr1:155904800-155911000	Weak transcription	Gastric	stomach
4	chr1:155905000-155907800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:155905000-155907800	Weak transcription	Brain Anterior Caudate	brain
6	chr1:155905000-155907800	Weak transcription	Brain Substantia Nigra	brain
7	chr1:155905000-155907800	Weak transcription	Fetal Heart	heart
8	chr1:155905000-155908000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:155905000-155908000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr1:155905000-155908000	Weak transcription	Primary B cells from cord blood	blood
11	chr1:155905000-155908000	Weak transcription	Primary B cells from peripheral blood	blood
12	chr1:155905000-155908000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr1:155905000-155908000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr1:155905000-155908000	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr1:155905000-155908000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr1:155905000-155908000	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr1:155905000-155908000	Weak transcription	Adipose Nuclei	Adipose
18	chr1:155905000-155908000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr1:155905000-155908000	Weak transcription	Brain Hippocampus Middle	brain
20	chr1:155905000-155908000	Weak transcription	Duodenum Mucosa	Duodenum
21	chr1:155905000-155908000	Weak transcription	Fetal Kidney	kidney
22	chr1:155905000-155908000	Weak transcription	HMEC	breast
23	chr1:155905000-155908000	Weak transcription	HSMM	muscle
24	chr1:155905000-155908000	Weak transcription	HSMMtube	muscle
25	chr1:155905000-155908000	Weak transcription	HUVEC	blood vessel
26	chr1:155905000-155908000	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr1:155905000-155908000	Weak transcription	NH-A	brain
28	chr1:155905000-155908200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr1:155905000-155908200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr1:155905000-155908200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr1:155905000-155908200	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr1:155905000-155908200	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr1:155905000-155908200	Weak transcription	Fetal Lung	lung
34	chr1:155905000-155908200	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr1:155905000-155908200	Weak transcription	A549	lung
36	chr1:155905000-155908200	Weak transcription	GM12878-XiMat	blood
37	chr1:155905000-155908600	Weak transcription	Left Ventricle	heart
38	chr1:155905000-155908600	Weak transcription	Lung	lung
39	chr1:155905000-155909200	Weak transcription	Primary hematopoietic stem cells	blood
40	chr1:155905000-155909400	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr1:155905000-155909800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr1:155905000-155909800	Weak transcription	Primary T cells from cord blood	blood
43	chr1:155905000-155909800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr1:155905000-155909800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr1:155905000-155909800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr1:155905000-155909800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr1:155905000-155909800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr1:155905000-155909800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr1:155905000-155909800	Weak transcription	Colonic Mucosa	Colon
50	chr1:155905000-155909800	Weak transcription	Right Atrium	heart

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