Variant report

Variant	rs2152121
Chromosome Location	chr1:71231899-71231900
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10889891	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10889892	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11209705	0.87[ASN][1000 genomes]
rs11579908	0.87[ASN][1000 genomes]
rs11803673	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11810467	0.87[ASN][1000 genomes]
rs12026456	0.87[ASN][1000 genomes]
rs12040186	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12049445	0.87[ASN][1000 genomes]
rs12049500	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1335002	0.98[ASN][1000 genomes]
rs1591386	1.00[ASN][1000 genomes]
rs17131473	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1889598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1932050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2152122	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2152123	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2782768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2782769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2782770	1.00[ASN][1000 genomes]
rs2782771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2782772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2820540	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2820541	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2820542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34087524	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34745168	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35615554	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4320734	0.91[ASN][1000 genomes]
rs55884889	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs74086786	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs74086973	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs915220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71229600-71232200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr1:71229800-71233000	Enhancers	NHDF-Ad	bronchial
3	chr1:71230200-71233200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr1:71230200-71233600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:71230800-71233000	Enhancers	NHLF	lung
6	chr1:71230800-71233000	Enhancers	Osteobl	bone
7	chr1:71231000-71232000	Weak transcription	K562	blood
8	chr1:71231000-71232200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr1:71231200-71232200	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr1:71231200-71232200	Enhancers	HSMM	muscle
11	chr1:71231400-71232000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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