Variant report

Variant	rs2152388
Chromosome Location	chr1:76608351-76608352
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs597362	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1488	chr1:76587622-76632635	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76576600-76620000	Weak transcription	Primary B cells from cord blood	blood
2	chr1:76588200-76615600	Weak transcription	Left Ventricle	heart
3	chr1:76592600-76610800	Weak transcription	Fetal Kidney	kidney
4	chr1:76594600-76615400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:76598600-76609800	Weak transcription	Fetal Stomach	stomach
6	chr1:76599800-76620200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:76604800-76609200	Enhancers	Brain Hippocampus Middle	brain
8	chr1:76605000-76608800	Enhancers	Brain Substantia Nigra	brain
9	chr1:76606200-76608800	Weak transcription	Fetal Brain Male	brain
10	chr1:76606200-76613400	Weak transcription	Brain Anterior Caudate	brain
11	chr1:76606200-76614800	Weak transcription	Brain Angular Gyrus	brain
12	chr1:76606200-76620000	Weak transcription	Spleen	Spleen
13	chr1:76606800-76608600	Weak transcription	Fetal Intestine Large	intestine
14	chr1:76606800-76608800	Weak transcription	Fetal Intestine Small	intestine
15	chr1:76607000-76608400	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr1:76607200-76609600	Weak transcription	Stomach Mucosa	stomach
17	chr1:76607600-76608400	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr1:76607600-76608400	Enhancers	Lung	lung
19	chr1:76607600-76608600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr1:76607600-76608600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr1:76607600-76616000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr1:76607800-76608800	Weak transcription	Adipose Nuclei	Adipose
23	chr1:76607800-76609000	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr1:76608000-76608400	Weak transcription	Brain Cingulate Gyrus	brain
25	chr1:76608000-76608800	Enhancers	Placenta Amnion	Placenta Amnion
26	chr1:76608000-76609200	Enhancers	Sigmoid Colon	Sigmoid Colon
27	chr1:76608000-76610000	Enhancers	Right Atrium	heart
28	chr1:76608000-76620200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr1:76608200-76608400	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr1:76608200-76608400	Enhancers	Duodenum Mucosa	Duodenum
31	chr1:76608200-76608400	Enhancers	Fetal Lung	lung
32	chr1:76608200-76608600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr1:76608200-76609000	Weak transcription	Aorta	Aorta
34	chr1:76608200-76609000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr1:76608200-76609600	Enhancers	Fetal Heart	heart
36	chr1:76608200-76620200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr1:76608200-76620200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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