Variant report

Variant	rs2153714
Chromosome Location	chr10:119147579-119147580
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:119134198..119139472-chr10:119144770..119150329,7	K562	blood:
2	chr10:119142776..119144922-chr10:119146819..119151115,5	K562	blood:
3	chr10:119143112..119144922-chr10:119146819..119149233,2	K562	blood:
4	chr10:119136362..119138041-chr10:119146326..119148907,2	K562	blood:

Variant related genes	Relation type
ENSG00000165650	Chromatin interaction

Extended variants
information (count: 96 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10082478	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10787767	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10787771	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10787772	0.86[AMR][1000 genomes]
rs10886058	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10886062	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11197968	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs11197969	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs11197974	0.82[ASN][1000 genomes]
rs11197975	0.83[ASN][1000 genomes]
rs11197976	0.83[ASN][1000 genomes]
rs11197977	0.84[ASN][1000 genomes]
rs11197981	0.89[CEU][hapmap];0.81[CHD][hapmap];0.82[GIH][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs11197983	0.85[AMR][1000 genomes]
rs11197985	0.85[AMR][1000 genomes]
rs12243133	0.84[ASN][1000 genomes]
rs12243925	0.83[AMR][1000 genomes]
rs12244411	0.83[CHD][hapmap];0.81[GIH][hapmap];0.86[JPT][hapmap]
rs12256994	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12260782	0.85[AMR][1000 genomes]
rs12265713	1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12413507	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs12414644	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12569963	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12571779	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12572369	0.86[AMR][1000 genomes]
rs12573009	0.80[CEU][hapmap];0.83[JPT][hapmap]
rs1860407	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1935166	0.80[ASN][1000 genomes]
rs1935167	0.86[CEU][hapmap];0.84[JPT][hapmap]
rs1954212	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs2244249	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs2255321	0.84[JPT][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2255367	0.89[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap]
rs2275670	0.83[ASN][1000 genomes]
rs2420457	0.82[ASN][1000 genomes]
rs2429505	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs2490631	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs2532782	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs2532783	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs2532784	0.89[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap]
rs2532785	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs2532786	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs2532795	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs2532796	0.89[CEU][hapmap];0.83[CHB][hapmap];0.87[JPT][hapmap]
rs2532809	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2532817	0.82[JPT][hapmap]
rs2532836	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs2532838	0.89[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap]
rs2532839	0.89[CEU][hapmap];0.82[GIH][hapmap];0.84[JPT][hapmap]
rs2532840	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs2532842	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs2532844	1.00[CEU][hapmap];0.81[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.89[JPT][hapmap]
rs2794436	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs2803799	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs2803801	0.85[JPT][hapmap]
rs2803804	0.89[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap]
rs2803807	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs2803810	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs2803816	0.89[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap]
rs2901123	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34247425	0.80[ASN][1000 genomes]
rs363227	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs363228	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs363229	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs363235	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs363236	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs363238	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs363242	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs363243	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs363271	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs363272	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs363275	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs363276	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs363278	1.00[CEU][hapmap];0.89[JPT][hapmap]
rs363282	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs363303	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3814229	0.82[ASN][1000 genomes]
rs3814230	0.89[CEU][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs4751623	0.88[CEU][hapmap];0.82[JPT][hapmap]
rs4752048	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4752051	0.89[JPT][hapmap]
rs4752052	0.81[GIH][hapmap]
rs4752055	0.86[AMR][1000 genomes]
rs4752056	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6585431	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs7070594	0.89[CEU][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs7072027	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs7086651	0.89[CEU][hapmap];0.80[CHD][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs7088401	0.80[ASN][1000 genomes]
rs72825515	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72825561	0.85[AMR][1000 genomes]
rs7897828	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs7898092	0.89[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap]
rs887341	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs979992	0.89[CEU][hapmap];0.84[JPT][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2153714	PDZD8	Cis_1M	lymphoblastoid	RTeQTL
rs2153714	NRAP	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119147000-119149000	Enhancers	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links