Variant report

Variant	rs2159457
Chromosome Location	chr14:72412076-72412077
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:72410955..72413262-chr14:72418507..72421384,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11158920	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11158921	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11158927	1.00[CEU][hapmap]
rs11620690	0.92[CEU][hapmap];0.86[CHB][hapmap]
rs11623492	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs11623535	0.85[CHB][hapmap]
rs11625937	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs11627768	1.00[CEU][hapmap];0.82[CHB][hapmap];0.80[JPT][hapmap]
rs11628133	1.00[CEU][hapmap]
rs11628574	1.00[CEU][hapmap]
rs12148043	1.00[CEU][hapmap]
rs12433721	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12434220	0.84[ASN][1000 genomes]
rs12437172	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12897929	0.81[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs17093750	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17104493	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17105346	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs17105566	0.92[CEU][hapmap];0.86[CHB][hapmap]
rs17105606	0.92[CEU][hapmap]
rs17105690	0.92[CEU][hapmap]
rs2067856	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2190864	0.80[CHB][hapmap];0.82[ASN][1000 genomes]
rs2238277	1.00[CEU][hapmap];0.93[CHB][hapmap];0.84[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2238280	0.93[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2877771	0.85[ASN][1000 genomes]
rs34729701	0.85[ASN][1000 genomes]
rs35051666	0.85[ASN][1000 genomes]
rs35858041	0.85[ASN][1000 genomes]
rs3784055	1.00[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs3784056	1.00[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs3784058	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4243640	0.85[CHB][hapmap]
rs4350510	0.86[CHB][hapmap]
rs4354860	0.85[CHB][hapmap]
rs4899409	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4899412	0.85[CHB][hapmap]
rs4902958	1.00[CEU][hapmap];0.93[CHB][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4902966	0.86[CHB][hapmap]
rs56067914	0.89[ASN][1000 genomes]
rs56743778	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72734102	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72735921	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72735923	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs728497	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7493353	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7494103	1.00[CEU][hapmap]
rs8013467	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72408600-72412600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr14:72409400-72412600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:72410600-72412400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr14:72410600-72425400	Weak transcription	Left Ventricle	heart
5	chr14:72411000-72412800	Weak transcription	GM12878-XiMat	blood
6	chr14:72411600-72412400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr14:72411800-72415600	Strong transcription	Cortex derived primary cultured neurospheres	brain

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