Variant report

Variant	rs2159745
Chromosome Location	chr2:210678691-210678692
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10170708	1.00[AMR][1000 genomes]
rs11894334	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12466464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13424791	1.00[AMR][1000 genomes]
rs1558439	0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16843914	1.00[AMR][1000 genomes]
rs16843974	1.00[AMR][1000 genomes]
rs41432449	1.00[AMR][1000 genomes]
rs41502644	1.00[AMR][1000 genomes]
rs4673488	1.00[AFR][1000 genomes]
rs6741657	0.82[YRI][hapmap];1.00[AFR][1000 genomes]
rs7572221	0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs758942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009129	chr2:210550858-210681136	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv3142	chr2:210660150-210705006	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210652200-210685000	Weak transcription	Brain Angular Gyrus	brain
2	chr2:210652400-210681000	Weak transcription	Brain Anterior Caudate	brain
3	chr2:210665800-210681800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr2:210671400-210681200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr2:210671400-210682400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr2:210674400-210682000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr2:210674400-210685000	Weak transcription	Fetal Brain Female	brain
8	chr2:210674800-210685000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr2:210676000-210682800	Weak transcription	Brain Germinal Matrix	brain
10	chr2:210677800-210678800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr2:210677800-210678800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr2:210677800-210678800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr2:210677800-210678800	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr2:210677800-210678800	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr2:210677800-210678800	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr2:210677800-210678800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr2:210678000-210678800	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr2:210678400-210682000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr2:210678600-210681400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr2:210678600-210681800	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr2:210678600-210682200	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr2:210678600-210682400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr2:210678600-210682800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr2:210678600-210688400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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