Variant report

Variant	rs2159748
Chromosome Location	chr2:210627442-210627443
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10172938	0.84[AFR][1000 genomes]
rs10175106	0.84[AFR][1000 genomes]
rs10175169	0.80[AFR][1000 genomes]
rs10183823	0.84[AFR][1000 genomes]
rs10205924	0.84[AFR][1000 genomes]
rs13386656	0.88[AFR][1000 genomes]
rs13422135	0.84[AFR][1000 genomes]
rs13424532	1.00[AFR][1000 genomes]
rs28655347	0.84[AFR][1000 genomes]
rs6733067	0.84[AFR][1000 genomes]
rs6754623	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009129	chr2:210550858-210681136	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210625800-210628000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr2:210626000-210628400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:210627200-210627800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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