Variant report

Variant	rs2161056
Chromosome Location	chr9:72229395-72229396
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:72227183..72230122-chr9:72233489..72235436,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10123008	1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10746682	0.86[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10780539	0.87[ASW][hapmap];0.86[CEU][hapmap];0.86[CHD][hapmap];0.87[GIH][hapmap];0.92[JPT][hapmap];0.81[MEX][hapmap];0.85[TSI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10867825	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs10867828	0.86[CEU][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10867830	0.82[CEU][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11139511	0.86[CEU][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.92[TSI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1330334	0.86[CHD][hapmap];0.85[JPT][hapmap];0.86[MEX][hapmap]
rs1330336	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1411440	0.84[JPT][hapmap];0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1556211	0.82[CEU][hapmap]
rs1854702	0.85[JPT][hapmap]
rs1854703	0.82[CEU][hapmap];0.85[JPT][hapmap]
rs2026150	0.82[CEU][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2309515	0.82[CEU][hapmap];0.91[CHD][hapmap];0.89[GIH][hapmap];0.92[JPT][hapmap];0.85[TSI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4744917	0.85[JPT][hapmap]
rs4744919	0.83[JPT][hapmap]
rs7030393	0.85[JPT][hapmap]
rs7031694	0.91[CHD][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs986352	0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs987653	0.90[CEU][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];0.92[JPT][hapmap];0.85[TSI][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2161056	ZFAND5	cis	parietal	SCAN
rs2161056	GDA	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72215600-72235200	Weak transcription	Aorta	Aorta
2	chr9:72219800-72242600	Weak transcription	Left Ventricle	heart
3	chr9:72221200-72237200	Weak transcription	Ovary	ovary
4	chr9:72226200-72231800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr9:72226200-72236800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr9:72226600-72234800	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links