Variant report

Variant	rs2162974
Chromosome Location	chr5:80685611-80685612
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10746	0.85[EUR][1000 genomes]
rs13154229	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13155027	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13155682	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13162911	0.81[AMR][1000 genomes]
rs13176170	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13185752	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13186206	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13190050	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13190332	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17230425	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17230796	0.80[EUR][1000 genomes]
rs17296290	0.81[EUR][1000 genomes]
rs2042981	0.80[EUR][1000 genomes]
rs2059892	0.81[EUR][1000 genomes]
rs2059893	0.81[EUR][1000 genomes]
rs33989062	0.80[EUR][1000 genomes]
rs34094852	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34442739	0.81[EUR][1000 genomes]
rs34513795	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34588330	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34594743	0.81[EUR][1000 genomes]
rs34955738	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35003041	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35367896	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35399912	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35626276	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35657180	0.83[EUR][1000 genomes]
rs4703521	0.80[EUR][1000 genomes]
rs4703522	0.81[EUR][1000 genomes]
rs4703524	0.80[EUR][1000 genomes]
rs4703834	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4703835	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4703837	0.81[EUR][1000 genomes]
rs5005446	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71636272	0.81[EUR][1000 genomes]
rs723046	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024844	chr5:79862428-80860430	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv3470537	chr5:80685452-80686683	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
3	esv3470538	chr5:80685553-80686546	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:80683200-80686600	Weak transcription	Liver	Liver

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